PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim09g066060.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 249aa MW: 28795.3 Da PI: 8.49 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 6e-18 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le++F+k+++p++++ ++L ++ gL+ +qVk+WFqN+R++ k Sopim09g066060.0.1 26 HRHSMEQIQRLEAFFKKCPHPDEDQQKQLGREAGLDHKQVKFWFQNKRTQTK 77 57899********************************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 6 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-17 | 8 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.916 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-12 | 21 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 26 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.95E-13 | 26 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MTGSGEEPAG EPSNSQNRSE RHGQYHRHSM EQIQRLEAFF KKCPHPDEDQ QKQLGREAGL 60 DHKQVKFWFQ NKRTQTKTQN ERSINNALRK EKERFLCENK AMKEAMKNIM CPKCDGLPIG 120 KEERERNLEN MKTENQLLTE QYEKVSNLIS HVVGRPYVMD SNLAPQKSTL RSTSNSSDGT 180 LLNQEICGSL IRYPPLLPEN NHNNNNVHTH SLMSPSPHEH DEYHLDSRRR KIMFDTAVAS 240 MNEMVKLR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-158 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087432.1 | 1e-164 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 1e-45 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3Q7J0D6 | 0.0 | A0A3Q7J0D6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g066060.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13886 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17320.1 | 2e-42 | homeodomain GLABROUS 9 |