PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g064920.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31387 Da PI: 5.0376 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.0004 | 158 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +r RR +i ++++ L el + +++ Ka+ + +++Ik+Lq Sopim09g064920.0.1 158 RAALSDRHRRMKIAERIDALGELFSCS--KQGG---KASQMDEIIDHIKYLQ 204 556778****************99996..2555...5566679999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 152 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-8 | 153 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.179 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.94E-4 | 155 | 206 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGEQNQPNFV GTQWAFLGST NDSFYLAGHE FNNQYMTEVG IDGIHYVPVP SPQWIHDQQT 60 PHNYVEYLAE NVVSEVDASV EATGFSLLEG SADIISQEIR YPRPYYEGVP PNCLNSSEHQ 120 RGALTWELRG NVRHASGPCS DASAAGSSYS SKSSRKARAA LSDRHRRMKI AERIDALGEL 180 FSCSKQGGKA SQMDEIIDHI KYLQFQMKDL SRSRLGGEPT SIPFVFLEGC GHYILDEQQI 240 EPLEDTMGKL LEVNPSLATQ LLESKSLFVM PLALAEGLHH HE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 1e-163 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247151.1 | 0.0 | transcription factor UNE12 isoform X1 | ||||
TrEMBL | A0A3Q7I554 | 0.0 | A0A3Q7I554_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g064920.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9646 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30980.1 | 2e-16 | LJRHL1-like 2 |