PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g060160.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 80aa    MW: 9111.99 Da    PI: 7.8102
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g060160.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.3e-082664543
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43
                        ++++ eq+++L ++F+k+++p++++ ++L ++ gL  +q
  Sopim09g060160.0.1 26 HKHSMEQIQRLDAFFKKCPHPDEDQQKQLGSEAGLHHKQ 64
                        57899***************************9999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-10764IPR009057Homeodomain-like
SuperFamilySSF466893.85E-62464IPR009057Homeodomain-like
PfamPF000462.2E-52664IPR001356Homeobox domain
CDDcd000862.67E-42964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MTDSVEEPAG ESSHSQKKSE RHGQYHKHSM EQIQRLDAFF KKCPHPDEDQ QKQLGSEAGL  60
HHKQSSFGSK TEGLKQRYF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755213e-64HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888845.15e-31homeobox-leucine zipper protein ROC8-like
TrEMBLA0A3Q7I2Y03e-50A0A3Q7I2Y0_SOLLC; Uncharacterized protein
STRINGSolyc09g060160.1.15e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2938622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.13e-14HD-ZIP family protein