PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g059510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 192aa    MW: 22001.5 Da    PI: 6.3764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g059510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-1260101351
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Sopim09g059510.0.1  60 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 101
                         79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.54442114IPR001471AP2/ERF domain
SMARTSM003807.6E-559116IPR001471AP2/ERF domain
PfamPF008471.5E-659102IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-860104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-762106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MPSTDIDESK EKIAVKVVPG SSNSHASGSL MEQTAQQFPE VKRRKRHRRK HFENQEPCLM  60
RGVYFKNMKW QAAIKVDKKQ IHLGTVGTQE EAARLYDRAA FMCGREPNFE LSEEEKQELR  120
QFKWDDFLAF TRSAITNKKT RRRSGAGARR KFEPLTSALN SEEDEEEEEG GEPESNSFSA  180
SEDIEHDILF S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540661e-96AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754481e-96HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-96HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247071.11e-139ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLA0A3Q7I2K01e-138A0A3Q7I2K0_SOLLC; Uncharacterized protein
STRINGSolyc09g059510.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.16e-49ERF family protein