PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g057550.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 75aa    MW: 8783.38 Da    PI: 9.8784
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g057550.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.75.4e-1528691556
                        HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        L ++F+k+++p++++ ++LA++ gL+ +qV +WFqNrR + k
  Sopim09g057550.0.1 28 LLRFFKKCPHPDEDQQKQLASEAGLDHKQVMFWFQNRRDQAK 69
                        7899**********************************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00611370IPR001356Homeobox domain
CDDcd000863.17E-101465No hitNo description
SuperFamilySSF466891.24E-131569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-132669IPR009057Homeodomain-like
PROSITE profilePS5007112.6332871IPR001356Homeobox domain
PfamPF000461.8E-122869IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MSSLKFNVFQ IFAPKSQTIY FPLCLIPLLR FFKKCPHPDE DQQKQLASEA GLDHKQVMFW  60
FQNRRDQAKV ILII*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755219e-71HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888845.14e-22homeobox-leucine zipper protein ROC8-like
TrEMBLK4CTE74e-47K4CTE7_SOLLC; Uncharacterized protein
STRINGSolyc09g057550.1.16e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2933122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34650.11e-15homeodomain GLABROUS 10