PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g011780.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 381aa    MW: 40845.1 Da    PI: 5.1726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g011780.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-1767112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Sopim09g011780.0.1  67 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 112
                         79******************************.***********985 PP
2Myb_DNA-binding58.21.9e-18119163147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r+++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Sopim09g011780.0.1 119 RKPFTDEEDRIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 163
                         789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.33262113IPR017930Myb domain
SuperFamilySSF466899.71E-3164160IPR009057Homeodomain-like
SMARTSM007177.1E-1566115IPR001005SANT/Myb domain
PfamPF002499.6E-1767112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2768120IPR009057Homeodomain-like
CDDcd001673.02E-1469111No hitNo description
PROSITE profilePS5129427.88114168IPR017930Myb domain
SMARTSM007178.9E-18118166IPR001005SANT/Myb domain
PfamPF002495.2E-16119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-24121167IPR009057Homeodomain-like
CDDcd001671.05E-13121164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MENDTPEVQE VTVAVDGSHG GGIGDASMGG GGGGGGVDGG DEEEVLMLED GSGSSDQVRK  60
KTADRVKGPW SPEEDAILSR LVSNFGARNW SLIARGIPGR SGKSCRLRWC NQLDPAVKRK  120
PFTDEEDRII LQAHAIHGNK WASIARLLPG RTDNAIKNHW NSTLRRRCAE HGKLRSDSSN  180
ILEDASAGKS KASSEETQSC GDVNSLKAIE AKDVSSQENQ EGNHYEDRSQ EVVQQSDVAN  240
DPRTLFRPVA RISAFSVYGS LNVPESQLQT PRLIPTQAPD LGITKLLEGA FTDRLVPHQC  300
GHGCCGNVNQ EINGSSLLGP EFVDYAEPPS FSSHELAALA TEISNVAWYK SGLENSSIEA  360
TFNPTTRAAC GTSHLPSRPF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-41641674107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246368.10.0transcription factor MYB1
SwissprotQ425755e-94MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A3Q7I0H70.0A0A3Q7I0H7_SOLLC; Uncharacterized protein
STRINGSolyc09g011780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-93myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]