PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g010920.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 762aa MW: 86040.7 Da PI: 6.1996

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g010920.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.3	8e-115	387	759	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++l+++cA+av+++d + a++lL+++++++sp gd +qRla++f+ +L+arla+++s++ykal ++ts ++ l+a++l+ sP+ Sopim09g010920.0.1 387 LRTLMINCAQAVAADDSRIANELLKQIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSQIYKALVNKRTS---AADLLKAYHLYLASSPFR 474 57899*********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s ++ N++I+ +e+++rvH+iDf+i +G+QWp+++q +a+R++gpp+lRiTg++ p++g +e++eetg+rLa++A++++vpfe+++ Sopim09g010920.0.1 475 KISSFASNKTIMLKAENATRVHVIDFGILYGFQWPTFIQRIAEREGGPPRLRITGIEFPQPGfrPAERIEETGRRLADYARSFNVPFEYHA 565 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e++++e+L+++++E laVn+ ++ ++l+de+ ++es r+ vL+lv++++P+++v+ + ++++ F++rf eal ++salfd l Sopim09g010920.0.1 566 -IAKKWESITVEDLKLDKDEFLAVNCLYRFKNLHDETIAVESSRTIVLNLVRKINPDIFVHGIVNGAYSAPFFVTRFREALFHFSALFDIL 655 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvksdgyrveeesgslvlg 361 e+ +pre er+ +Ere++gre+ nv+aceg er+er et+++W++r++ a F+++p++ + +++a +r + + + ++e+s++l+lg Sopim09g010920.0.1 656 ETIVPREIPERRLIEREIFGREALNVIACEGWERVERPETYKQWQARIMGARFTQIPFDREeFVNKAIEKVRLGYHRDFVIDEDSQWLLLG 746 ******************************************************86515677777888888788********* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+r+++++S+W+ Sopim09g010920.0.1 747 WKGRTIYALSCWK 759 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.222	361	738	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-112	387	759	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MDPRFNGHRS SLNNFRFGNQ PLPFSSEQRM INVPRFGLIY SDQNLLNGPR LENNFVQHDF 60 GAVGFISGDH LPTSVESRTD LGVENDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES 120 LELQAKEKSL YEALGKKYPP SLEQNVFTVR NSESPDDYVA GSIYNSTSNT GDSSGYLVDP 180 RGVNISTDCN SSYFEGLSFH NTSSLCSSNS GSNVVDGFLD SPVSSFRIPD IYDESRSILN 240 FQKGVEEASK FLPTSNKLLN SIDINGLPSR EPHRQTAYAA AQVEEKDEGE TSPTEGRGKK 300 NPLRGDNNIE EERSSKQAAV FTESTLRSEE FDIVLLNSMG KGGEALEAYQ QNLRNAKSKT 360 TVQISKKSKG GKGRGKKQGG KKEVIDLRTL MINCAQAVAA DDSRIANELL KQIRQHSSPF 420 GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADL LKAYHLYLAS SPFRKISSFA 480 SNKTIMLKAE NATRVHVIDF GILYGFQWPT FIQRIAEREG GPPRLRITGI EFPQPGFRPA 540 ERIEETGRRL ADYARSFNVP FEYHAIAKKW ESITVEDLKL DKDEFLAVNC LYRFKNLHDE 600 TIAVESSRTI VLNLVRKINP DIFVHGIVNG AYSAPFFVTR FREALFHFSA LFDILETIVP 660 REIPERRLIE REIFGREALN VIACEGWERV ERPETYKQWQ ARIMGARFTQ IPFDREEFVN 720 KAIEKVRLGY HRDFVIDEDS QWLLLGWKGR TIYALSCWKP V*

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MDPRFNGHRS SLNNFRFGNQ PLPFSSEQRM INVPRFGLIY SDQNLLNGPR LENNFVQHDF  60
GAVGFISGDH LPTSVESRTD LGVENDFNED IDFSDAVLSY INRMLMEEDM EDKTDMLQES  120
LELQAKEKSL YEALGKKYPP SLEQNVFTVR NSESPDDYVA GSIYNSTSNT GDSSGYLVDP  180
RGVNISTDCN SSYFEGLSFH NTSSLCSSNS GSNVVDGFLD SPVSSFRIPD IYDESRSILN  240
FQKGVEEASK FLPTSNKLLN SIDINGLPSR EPHRQTAYAA AQVEEKDEGE TSPTEGRGKK  300
NPLRGDNNIE EERSSKQAAV FTESTLRSEE FDIVLLNSMG KGGEALEAYQ QNLRNAKSKT  360
TVQISKKSKG GKGRGKKQGG KKEVIDLRTL MINCAQAVAA DDSRIANELL KQIRQHSSPF  420
GDGNQRLAHC FADGLEARLA GTGSQIYKAL VNKRTSAADL LKAYHLYLAS SPFRKISSFA  480
SNKTIMLKAE NATRVHVIDF GILYGFQWPT FIQRIAEREG GPPRLRITGI EFPQPGFRPA  540
ERIEETGRRL ADYARSFNVP FEYHAIAKKW ESITVEDLKL DKDEFLAVNC LYRFKNLHDE  600
TIAVESSRTI VLNLVRKINP DIFVHGIVNG AYSAPFFVTR FREALFHFSA LFDILETIVP  660
REIPERRLIE REIFGREALN VIACEGWERV ERPETYKQWQ ARIMGARFTQ IPFDREEFVN  720
KAIEKVRLGY HRDFVIDEDS QWLLLGWKGR TIYALSCWKP V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-49	376	760	8	380	Protein SCARECROW
5b3h_A	2e-49	370	760	1	379	Protein SCARECROW
5b3h_D	2e-49	370	760	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU180573	0.0	EU180573.1 Solanum lycopersicum clone BAC C09HBa0142I14, complete sequence.
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010325850.1	0.0	scarecrow-like protein 9
Refseq	XP_019071333.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3Q7IU67	0.0	A0A3Q7IU67_SOLLC; Uncharacterized protein
STRING	Solyc09g010920.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein