PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g010820.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 534aa    MW: 59147.1 Da    PI: 8.2089
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g010820.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-1656101147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g WT+eEd+ l++av  + g++Wk+Ia+ ++  R++ qc +rwqk+
  Sopim09g010820.0.1  56 KGGWTPEEDDTLKQAVSVYRGKCWKKIAEFFP-DRSEVQCLHRWQKV 101
                         688*****************************.************96 PP
2Myb_DNA-binding53.26.7e-17108154148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT eEd++++++v+++G+  W+ Ia+ +  gR +kqc++rw+++l
  Sopim09g010820.0.1 108 KGPWTREEDDKIIELVAKYGPIKWSVIAKSLT-GRIGKQCRERWHNHL 154
                         79******************99*********9.*************97 PP
3Myb_DNA-binding54.42.9e-17160203146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +++WT eE+  l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Sopim09g010820.0.1 160 KDAWTLEEERALIDAHRIHGNK-WAEIAKVLP-GRTDNGIKNHWNS 203
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.53851102IPR017930Myb domain
SuperFamilySSF466891.08E-1452109IPR009057Homeodomain-like
SMARTSM007171.1E-1455104IPR001005SANT/Myb domain
PfamPF002493.4E-1556101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2158114IPR009057Homeodomain-like
CDDcd001671.50E-1259102No hitNo description
PROSITE profilePS5129430.523103158IPR017930Myb domain
SuperFamilySSF466891.64E-30105201IPR009057Homeodomain-like
SMARTSM007173.0E-17107156IPR001005SANT/Myb domain
CDDcd001678.64E-15110154No hitNo description
PfamPF139212.3E-17111171No hitNo description
Gene3DG3DSA:1.10.10.601.4E-26115161IPR009057Homeodomain-like
SMARTSM007172.5E-16159207IPR001005SANT/Myb domain
PROSITE profilePS5129422.531159209IPR017930Myb domain
CDDcd001672.75E-12162205No hitNo description
Gene3DG3DSA:1.10.10.602.9E-23162209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MKVEECCTEN KQSAAASSSS VSENSGSVTL RSPAVSSPTP ASPTHRRTTG PIRRAKGGWT  60
PEEDDTLKQA VSVYRGKCWK KIAEFFPDRS EVQCLHRWQK VINPELVKGP WTREEDDKII  120
ELVAKYGPIK WSVIAKSLTG RIGKQCRERW HNHLNPNIKK DAWTLEEERA LIDAHRIHGN  180
KWAEIAKVLP GRTDNGIKNH WNSSLKKKLD FYVATGNLPP ATGTAKAEEL PVWSNKTSEG  240
AEVASSGTTD TCKIENRWQV AEISASNGGP QTESTDSEVV RLESQSPEED AIQHIKPSTQ  300
SENRYEGWNM DSAVGRLQVF EAPFPCEIPT CGMLCYEPPR SESCIPLDSD LLNICRAQCE  360
SDASPSPSPD GFFTPPSTKG RNLCAQTPES VLRIAARSFP NTPSILRKRK IQGELSTPTN  420
KMGKSDGDLR MEKPIDARDE IQYDSSHKSS MHNGVSSRNS FNGGLYNSQA FNASPPYRLR  480
SKRTSIFKSV EKQLRFAVNK EKHDTSNGFS GSTVNEISHA AKDCSQDTDK KVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69552095159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69552095159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246407.10.0transcription factor MYB3R-3
RefseqXP_010325858.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-143MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A3Q7HZV40.0A0A3Q7HZV4_SOLLC; Uncharacterized protein
STRINGSolyc09g010820.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-133myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]