PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g009250.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 544aa MW: 62488.1 Da PI: 7.0008 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.8 | 1.7e-29 | 129 | 214 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Sopim09g009250.0.1 129 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 214 8*************************************999*****************************98..55667*******85 PP | |||||||
2 | trihelix | 51.8 | 2.1e-16 | 415 | 507 | 2 | 73 |
trihelix 2 WtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+++e+ Li++r++me+r+++ + lWee+s+km+ g+ +s+++Ck++w ++n + k+++ +k++ Sopim09g009250.0.1 415 WPDSEITRLIQLRTSMESRFQQLGisssindhdhdhdhdndhsnnHDHVLWEEISAKMSILGYDKSATMCKKRWGSINSYLMKCNKKRKDQ 505 *********************843334567777888888888888999**************************************99986 PP trihelix 72 ts 73 +s Sopim09g009250.0.1 506 NS 507 33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.033 | 126 | 189 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.073 | 128 | 187 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.3E-20 | 129 | 215 | No hit | No description |
CDD | cd12203 | 1.16E-19 | 129 | 194 | No hit | No description |
SMART | SM00717 | 0.47 | 411 | 494 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.3E-11 | 413 | 508 | No hit | No description |
PROSITE profile | PS50090 | 5.181 | 415 | 492 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.44E-15 | 415 | 499 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046621 | Biological Process | negative regulation of organ growth | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048498 | Biological Process | establishment of petal orientation | ||||
GO:0090428 | Biological Process | perianth development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MEDQYGMADL RQYMNGGRSI FGSIQQVPPE LLPATSHQQQ QHGNLGPGHH HYDMVMGLAQ 60 VPSSSSGHGL TTPHHHHHHQ HHQHEFLTDS STPVAVAATA TGATTTSAGF SGMDQMETGG 120 GGGGDGSGRW PRQETLTLLE IRSRLDPKFK EANQKGPLWD EVSRIMSEEH GYQRTGKKCR 180 EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEALYGETS NNISSTSMDI LHQGSHFPYN 240 SVNNMSQDPH NFHHHQASKL SDSMSLSNSS ELNTSSSDDS DHHDKKKRRG KRSLKAKIKD 300 FIDGQMRKLM EKQEEWMEKM MKMIEHKEQE RILREEEWRK QETIRIEKEH NFWANERAWI 360 ETRDAALMEA VNKLSGKDLK STSSNPRSLD EEMVEIHNRN GDVTDSLKDD VDQHWPDSEI 420 TRLIQLRTSM ESRFQQLGIS SSINDHDHDH DHDNDHSNNH DHVLWEEISA KMSILGYDKS 480 ATMCKKRWGS INSYLMKCNK KRKDQNSTSL LCYNSNVQIN NQYYEADGSS CFRYLMGDHH 540 QNL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 288 | KKKRR |
2 | 284 | 291 | KKKRRGKR |
3 | 285 | 290 | KKRRGK |
4 | 484 | 502 | KKRWGSINSYLMKCNKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246556.1 | 0.0 | trihelix transcription factor PTL | ||||
Swissprot | Q9LZS0 | 1e-113 | PTL_ARATH; Trihelix transcription factor PTL | ||||
TrEMBL | A0A3Q7HWV1 | 0.0 | A0A3Q7HWV1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g009250.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3063 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03680.1 | 1e-91 | Trihelix family protein |
Publications ? help Back to Top | |||
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