PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim09g009240.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22064.8 Da PI: 6.2725 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 33 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++k++g+Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+ +l+g Sopim09g009240.0.1 33 PVYRGIRRRKSSGKWVSEIREPK----SpNRIWLGTFPTPEMAAIAYDVAAIALKG 84 68*******************93....578**********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-12 | 33 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 34 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 34 | 94 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-32 | 34 | 98 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 34 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.6E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.03E-30 | 35 | 94 | No hit | No description |
PRINTS | PR00367 | 9.6E-8 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTTTTYGGKN IIIGGSNNSR TAPNNKSYSG RHPVYRGIRR RKSSGKWVSE IREPKSPNRI 60 WLGTFPTPEM AAIAYDVAAI ALKGPEADLN FPNSAASFPV PATSSARDIQ TAAARAAAAV 120 GAAGDALLAA AAVHREVVIN EKGKLENVEI QNFEFMDEDL IFDMPNVLVN MAEGMLLSPP 180 RFYMHDDDDQ TTITYQNLWN YT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888712.1 | 1e-149 | ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 2e-53 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A3Q7HZ49 | 1e-147 | A0A3Q7HZ49_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g009240.1.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 6e-45 | ERF family protein |