PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim09g009200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 382aa MW: 42036.9 Da PI: 9.2625 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.9 | 2.3e-25 | 149 | 192 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Sopim09g009200.0.1 149 DPEPGRCRRTDGKKWRCSRDVVSGHKYCERHVHRGRNRSRKPVE 192 79***************************************987 PP | |||||||
2 | QLQ | 50.9 | 4.8e-18 | 80 | 114 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ aQ+q+L+ Q+l+yK+++a++PvP+eLl i+ Sopim09g009200.0.1 80 YFSLAQWQELELQALIYKHMLAGAPVPHELLYLIK 114 7*****************************98887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.5E-10 | 79 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.684 | 80 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.7E-13 | 80 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.911 | 149 | 193 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-21 | 150 | 192 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 382 aa Download sequence Send to blast |
MDFKLKQWRN ESSSSEEKST KLPNLVLDLD SFSPSCYSHS DSDSNSSALP LFVSEPINKL 60 SAFADSSLTP TKLPSMGNGY FSLAQWQELE LQALIYKHML AGAPVPHELL YLIKKSLSNS 120 SPYYNMSQQY HHYQQAMLHS GYWGRTNMDP EPGRCRRTDG KKWRCSRDVV SGHKYCERHV 180 HRGRNRSRKP VEIPTTTTPR GCNAATSSRG GSEVRKVNPA MTSHGGVTPQ FALSGHANSV 240 DLLHLNQRPS KSIIEKKVPM EAQNDSKPSG QILRHFFDDW PRQQLEENEN ATSMASATSL 300 SISMPGNSSS DVSLKLSTGD RHNSGTGVHN VERSMWGSTQ VAPMGGPLAE ALRSSMSSSS 360 PTSVLHHLPR GSTSEASYVT T* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246560.1 | 0.0 | growth-regulating factor 3-like | ||||
TrEMBL | A0A3Q7HWU0 | 0.0 | A0A3Q7HWU0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g009200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3283 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52910.1 | 8e-65 | growth-regulating factor 4 |