PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g008850.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 533aa    MW: 58101.1 Da    PI: 6.8381
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g008850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.2e-18146232186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +L+ea+ e+  +l+rg+l++ +Weev+  +  r ++ ++s +qCk+k +nl+kryk ++++++++   + s++p+f+q+e
  Sopim09g008850.0.1 146 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAVMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GLTISHWPWFKQME 232
                         5**********************************999767778899************************98.88999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-20144234No hitNo description
Gene3DG3DSA:3.40.1160.104.6E-67280525IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.522286526IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.28E-53286525IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.3E-5288302IPR001057Glutamate/acetylglutamate kinase
CDDcd042546.32E-111289526No hitNo description
PfamPF006964.4E-23290505IPR001048Aspartate/glutamate/uridylate kinase
PRINTSPR004741.3E-5432459IPR001057Glutamate/acetylglutamate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0006561Biological Processproline biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MASCDDDFSL LGDDNAAVAV TPTTTTANPN YHHQPFSSVR YKPVQIHPPP ISAGSPKNIS  60
GDEDDGDGYS DNNAQSYHMG VNPYENDSIP FENDTNVNRS RGKSSNEKRA DREDISDNGT  120
PYSYKRSRIS SSSGSGSGEY RKDREEWSDT AIACLLEAYM EKFVQLNRGN LRGRDWEEVA  180
VMVSERCEKQ SKSVEQCKNK VDNLKKRYKL ERHRMSNGGL TISHWPWFKQ MEQIVGNSVS  240
VKATSEEDKA IVPMNNSSTG RQPKRYGTAV PSPSGQIVKA KSSMSPRWRR VVLKISGAAL  300
AGMTPNTNDA NNIDPKVATL LAAEVSIACR LGIEVAIVVG GRNFFCGETW VTSTGLERCT  360
AYQIGMMATL MNSILLQSAL EKVGVQTRVQ SAFNMPELTE PYSRQRAMRH LEKGRVVIFG  420
GIGAGTGNPL FSTDTVAALR ASEIHADAIL KATNVDGVYV CDSRNNNVVA EHISFRELVS  480
GGDSPLDLMA VTLCEENAFP VVIFNLHGPG NISRALCGEQ VGTLIDQTGR VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-562885259239Uridylate kinase
3ek5_B2e-562885259239Uridylate kinase
3ek5_C2e-562885259239Uridylate kinase
3ek5_D2e-562885259239Uridylate kinase
3ek5_E2e-562885259239Uridylate kinase
3ek5_F2e-562885259239Uridylate kinase
3ek6_A2e-562885259239Uridylate kinase
3ek6_B2e-562885259239Uridylate kinase
3ek6_C2e-562885259239Uridylate kinase
3ek6_D2e-562885259239Uridylate kinase
3ek6_E2e-562885259239Uridylate kinase
3ek6_F2e-562885259239Uridylate kinase
3nwy_A4e-5627152534279Uridylate kinase
3nwy_B4e-5627152534279Uridylate kinase
3nwy_C4e-5627152534279Uridylate kinase
3nwy_D4e-5627152534279Uridylate kinase
3nwy_E4e-5627152534279Uridylate kinase
3nwy_F4e-5627152534279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246577.10.0uncharacterized protein LOC101247746
TrEMBLA0A3Q7HYY40.0A0A3Q7HYY4_SOLLC; Uncharacterized protein
STRINGSolyc09g008850.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein