PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g008250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 297aa    MW: 33173.9 Da    PI: 7.4474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g008250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
  Sopim09g008250.0.1 14 KGPWSPEEDAKLKEYIDKFGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Sopim09g008250.0.1  69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9962IPR017930Myb domain
SuperFamilySSF466893.76E-2711109IPR009057Homeodomain-like
SMARTSM007171.3E-111364IPR001005SANT/Myb domain
PfamPF002495.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-241569IPR009057Homeodomain-like
CDDcd001678.35E-91662No hitNo description
PROSITE profilePS5129422.28363117IPR017930Myb domain
SMARTSM007178.8E-1267115IPR001005SANT/Myb domain
PfamPF002492.6E-1169111IPR001005SANT/Myb domain
CDDcd001671.86E-870113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KFGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF  120
VSSSHKIRPL NHHDYHHQIP TNCYNNYSSL VQASSLLISS NYPNNTTFPC YETNIPSTTP  180
SSTSFLSAGA STSCTSGITA STFAGRTTSS DESYDISNFN FHSYMYNNNG VISEGEKLIS  240
GNNASGCYVD EQQNPLDYSS LEEIKDLIST NHGTCNSTSF LLDHEIKTEE KVIMYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315982.10.0protein blind-like1
TrEMBLA0A3Q7HYM40.0A0A3Q7HYM4_SOLLC; Uncharacterized protein
STRINGSolyc09g008250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-80myb domain protein 36