PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g007580.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 201aa    MW: 22000.5 Da    PI: 4.6251
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g007580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1259103347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++++   +G+g+W++I+r+   +Rt+ q+ s+ qky
  Sopim09g007580.0.1  59 AWTEEEHRSFLRGLDIYGKGDWRSISRHCVITRTAMQVASHAQKY 103
                         6***************************9989************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.87552108IPR017930Myb domain
SuperFamilySSF466891.2E-1555108IPR009057Homeodomain-like
SMARTSM007171.1E-956106IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.8E-1558106IPR006447Myb domain, plants
CDDcd001672.65E-1059104No hitNo description
Gene3DG3DSA:1.10.10.603.8E-1059105IPR009057Homeodomain-like
PfamPF002491.2E-1059103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEEALPGKIV DEIKDHYNIL LEDIDAIDFG GAPLPNYAEI QSNVNQNINA DVQWRRGAAW  60
TEEEHRSFLR GLDIYGKGDW RSISRHCVIT RTAMQVASHA QKYFKRVEAN KKGNRRRRAK  120
PSVLDITGVD TELGGTSEVP ITADMIDPAC EGSQAVPNTS TESMCYPEST NAEQMTTVVG  180
GENAFVNVDA SSGTSELLLV *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888763.11e-143transcription factor SRM1-like
SwissprotQ9FNN64e-35SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3Q7HY871e-142A0A3Q7HY87_SOLLC; Uncharacterized protein
STRINGSolyc09g007580.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44541329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-36MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]