PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g007570.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 257aa MW: 28668.4 Da PI: 4.7314

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g007570.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.1	1.5e-11	59	103	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++++ +G g+W++I+r+ +Rt+ q+ s+ qk+ Sopim09g007570.0.1 59 PWTEEEHRSFLRGLDIYGRGDWRSISRHCVITRTGMQVASHAQKF 103 8*************************9989*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	5.574	1	25	IPR017884	SANT domain
PROSITE profile	PS51294	17.347	52	108	IPR017930	Myb domain
SuperFamily	SSF46689	3.8E-15	55	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-9	56	106	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.1E-14	57	106	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.7E-10	58	100	IPR009057	Homeodomain-like
CDD	cd00167	2.75E-9	59	104	No hit	No description
Pfam	PF00249	2.1E-9	59	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEEALPQKSL QDIKDHYNIL LEDINAIDSG CVPLLNYLEM QSNANQNLKA DAKWRRGTPW 60 TEEEHRSFLR GLDIYGRGDW RSISRHCVIT RTGMQVASHA QKFFKRLEAA NKGERRASIL 120 DITSADAEAA GTSQVPKTED MIGPACGGSQ VVPNMSPQES TNAEQQMTTV AEDIDDLMTE 180 LEDATAASSG TYSHAITRIG SELEALLAEE QDYVYLQRLI LVEFFNKKTL AIRVLACSLF 240 ISVFLWLPDH KTYLVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	1e-180	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246920.2	1e-155	transcription factor SRM1-like
Swissprot	Q9FNN6	1e-38	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A3Q7ISF0	1e-147	A0A3Q7ISF0_SOLLC; Uncharacterized protein
STRING	Solyc09g007570.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4454	13	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	5e-41	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]