PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g007260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 456aa    MW: 49933.6 Da    PI: 7.0777
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g007260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17142191155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopim09g007260.0.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 191
                         78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-16142201IPR016177DNA-binding domain
PfamPF008472.1E-9142191IPR001471AP2/ERF domain
CDDcd000188.87E-12143201No hitNo description
SMARTSM003809.6E-32143205IPR001471AP2/ERF domain
PROSITE profilePS5103217.82143199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17143200IPR001471AP2/ERF domain
CDDcd000181.17E-12234279No hitNo description
SuperFamilySSF541711.7E-6234279IPR016177DNA-binding domain
SMARTSM003801.9E-12235283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MFDLNLCFEE DAMETVTTSG KLKELSFGQI ENSGTSNSSI VNVETSSTAG DDEFISCSDQ  60
RTDGYAFEIL RADYEVNGFV TKELFPLTGG ESAATPSQQQ QQWLDLSGNY GGVPMEQRIV  120
IGPPQLRQQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR  180
AYDRAAIKFR GLDADINFNV SDYHDDLKQM GNFSKEEFVH ILRRQSTGFS RGSSKYRGVT  240
LHKCGRWEAR MGQFLGKKAY DKAAIKCNGK EAVTNFELST YEGELSTEAE NGGADHNLDL  300
NLGIAPSVLA DDQGGNTCQM VNYVVQCASN GLPGYTGAMN IPTTTMGGKL LHGHQLLTDR  360
PLLWNGVNTS IFPTLKGTSL GKGIEVDSLP NWTRQDQHPY GGSPSVPLFS TAASSGFANS  420
TTAAAQLPRF STGKLPYQHS PSLANMNFAH YYCKS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2468790.0FM246879.2 Solanum tuberosum subsp. andigena mRNA for relative to APETALA2 1 (rap1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246701.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK033e-92RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7HXZ30.0A0A3Q7HXZ3_SOLLC; Uncharacterized protein
STRINGSolyc09g007260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.16e-94related to AP2.7