PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g083230.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRF | ||||||||
Protein Properties | Length: 399aa MW: 43707.7 Da PI: 7.8292 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.1 | 7.5e-24 | 124 | 167 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e Sopim08g083230.0.1 124 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 167 79***************************************987 PP | |||||||
2 | QLQ | 37.2 | 9.2e-14 | 74 | 108 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Qlq++ +Q + Ky++a++PvPp+Ll++++ Sopim08g083230.0.1 74 PFTASQLQEFQRQFIICKYIMASMPVPPHLLLPLP 108 9*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 8.5E-7 | 73 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.0E-11 | 74 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.004 | 74 | 109 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.911 | 124 | 168 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-19 | 125 | 167 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEKGENTELL DLKMKTSEVS YPNKRTMFMA PSSHPYFLKE TADDGGSGGS GPEKYVGSDV 60 VSSGASNTCA RKVPFTASQL QEFQRQFIIC KYIMASMPVP PHLLLPLPSP PQSNMDLKFS 120 SGSDPEPWRC KRTDGKKWRC SRDVAPDQKY CERHAHKSKP RSRKPVEIHT NPSPKSNNRH 180 SFQFPTVQPS NDQTRCIEWL GRGDTCGTIP VDDNCNKQLM QSIGFNTRNS PAFQVQHEPK 240 LYPMNFNQYM CNSSSDQALA SQLKNEHCNN SIIASLQGRG TTSNAWPKDG ISSNGSFTSL 300 TLSMSGWNGG MDDDNKHAQA GIRMLDSERS GDEVLRSQWL NPVSWMSSTA PGGPLGEALC 360 LGNASSLRSP HGYSNSSATS SCSFDSCENG SHGLDFIG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009261 | 0.0 | AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence. | |||
GenBank | AP009280 | 0.0 | AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246083.1 | 0.0 | growth-regulating factor 8-like | ||||
TrEMBL | A0A3Q7IRD8 | 0.0 | A0A3Q7IRD8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g083230.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12517 | 18 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 7e-28 | growth-regulating factor 8 |