PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g081670.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 342aa    MW: 38402.1 Da    PI: 8.3571
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g081670.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.5e-083780552
                 AP2  5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52
                        G+r+ k +gr +A I d       r k+++lg+f+t eeA +a+   + +
  Sopim08g081670.0.1 37 GIRRQK-NGRCAAVITDrI-----RhKKVWLGTFDTVEEASQAYFSKKSE 80
                        999877.8******99922.....35*****************9776655 PP
2AP228.63.7e-09214257754
                 AP2   7 rwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         r + k+gr++A I d +       kr++lg+f+t eeA +a+   + ++e
  Sopim08g081670.0.1 214 R-RQKNGRYEAVITDpF-----MhKRVRLGTFDTVEEASQAYFYKKSEFE 257
                         3.5669*********55.....46******************87776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.8373493IPR001471AP2/ERF domain
PfamPF008471.1E-43679IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-103683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-93777IPR001471AP2/ERF domain
SMARTSM003800.00473788IPR001471AP2/ERF domain
CDDcd000184.97E-113774No hitNo description
PROSITE profilePS5103211.127209266IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-9211256IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-8212249IPR001471AP2/ERF domain
SMARTSM003800.011212263IPR001471AP2/ERF domain
CDDcd000183.31E-11212249No hitNo description
PfamPF008473.0E-4214258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDSKKLVVNV YQGETLEYDE CNISKNCKTK ANVSLIGIRR QKNGRCAAVI TDRIRHKKVW  60
LGTFDTVEEA SQAYFSKKSE FQNEKLRNQG NKKSERKRET RSIVEVYKRG KYYSEKSDVK  120
QGNENVNGEV CHMESTWESE IDVVILSSFN GGTEQRIDSH EIGSVEEVFR IAKEGCRAFN  180
LGLMANVCGT KSSDDCNNTT SCNPKVKVSL IGARRQKNGR YEAVITDPFM HKRVRLGTFD  240
TVEEASQAYF YKKSEFEKLS HQGNQQNILK KNCDHIQQLE SSFVVASLDT VASESGISKR  300
IDSQGEEPKS SKATSCVESS DECCITTSCD PKTRISITGI R*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLA0A3Q7HUI30.0A0A3Q7HUI3_SOLLC; Uncharacterized protein
STRINGSolyc08g081670.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-11ERF family protein