PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g081650.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 909aa    MW: 102470 Da    PI: 7.3159
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g081650.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.15.8e-10125165549
                 AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 
                         GVr+ k +gr+ A I d    + ++k+++lg+f+t eeA +a+   
  Sopim08g081650.0.1 125 GVRRQK-NGRYGAVITD----QiRHKQVWLGTFDTVEEASQAYFSK 165
                         9**888.8*********....4345*****************9765 PP
2AP232.52.2e-10281328556
                 AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         GVr  k +gr+ A I d +   k+k+++lg+f+t eeA +a+   + +le+e
  Sopim08g081650.0.1 281 GVRKQK-NGRYGAVITDTT---KHKQVWLGTFDTVEEASQAYFSKKSELENE 328
                         9**888.8*********42...35******************9999999886 PP
3AP230.96.6e-10436482555
                 AP2   5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         GVr+ k +gr+ A I d       r k+++lg+f+t +eA +a+   + +le+
  Sopim08g081650.0.1 436 GVRRQK-NGRYGAVITDtT-----RhKQVWLGTFDTVDEASQAYFSKKSELEN 482
                         9**888.8*********33.....35******************999988886 PP
4AP231.64.1e-10587632554
                 AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                         G+r+ k +gr+ A I d      k+kr++lg+f+t eeA +a+   + +le
  Sopim08g081650.0.1 587 GIRRQK-KGRYGAVITD----RiKHKRVWLGTFDTVEEASQAYFSKKSELE 632
                         999888.7*********....4446******************88777776 PP
5AP231.25.6e-10694736651
                 AP2   6 VrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                         V+ +k +g++ +eIr p    ++ kr++lg+fgtae+A +a+   ++
  Sopim08g081650.0.1 694 VHKRKDSGKYTSEIRNP----ISkKRIWLGTFGTAEDAFQAYQSKKL 736
                         8899************7....246*****************976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.693122182IPR001471AP2/ERF domain
PfamPF008471.7E-5124168IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-9124165IPR016177DNA-binding domain
CDDcd000181.02E-11125162No hitNo description
Gene3DG3DSA:3.30.730.106.2E-10125162IPR001471AP2/ERF domain
SMARTSM003802.1E-4125188IPR001471AP2/ERF domain
PROSITE profilePS5103211.588278340IPR001471AP2/ERF domain
SMARTSM003802.3E-5278339IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-9280325IPR016177DNA-binding domain
PfamPF008471.2E-5281328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-10281325IPR001471AP2/ERF domain
CDDcd000183.37E-12281318No hitNo description
PROSITE profilePS5103211.337433492IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-9434480IPR016177DNA-binding domain
PfamPF008471.5E-5435482IPR001471AP2/ERF domain
CDDcd000184.13E-11436473No hitNo description
Gene3DG3DSA:3.30.730.101.0E-9436478IPR001471AP2/ERF domain
SMARTSM003802.8E-4436490IPR001471AP2/ERF domain
PROSITE profilePS5103211.838584641IPR001471AP2/ERF domain
PfamPF008474.8E-6586632IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-9586630IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-10587624IPR001471AP2/ERF domain
CDDcd000185.50E-12587624No hitNo description
SMARTSM003801.4E-4587643IPR001471AP2/ERF domain
PROSITE profilePS5103213.327690752IPR001471AP2/ERF domain
SMARTSM003801.3E-4691745IPR001471AP2/ERF domain
CDDcd000182.38E-10694731No hitNo description
SuperFamilySSF541712.94E-9694738IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-12694738IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
METDEEGLLA EEEEGKSSNK KQKMTQIEQP EIFVDKVKSV IPLQNTNHKA QSNKQETDGK  60
MPLFVNEWQM REKGAFLGTD EEFKGFSFNM HKFQEKEPFM HKSCLMSNVH GDTESSNKAK  120
VSLIGVRRQK NGRYGAVITD QIRHKQVWLG TFDTVEEASQ AYFSKKSEFE ILRQQGNKDN  180
KPKENSDQIQ LPESPVVLSS MSVASDQTLD SASVGCRNRR IDSHETTPHI VEVHKSKMSG  240
EVPESSKETQ CLVASVVQNT ESYDECNTST SNLKAKISLL GVRKQKNGRY GAVITDTTKH  300
KQVWLGTFDT VEEASQAYFS KKSELENEKL NQQHNKENRP KKNYGQIQQP ESPVVHASLS  360
VEGVQTLDTA SVGMRIERID FHGTTHVVEV RKSKTSEKEP EFSKDASCLM GSVHATESSD  420
QCNTSTGNPK AKNLIGVRRQ KNGRYGAVIT DTTRHKQVWL GTFDTVDEAS QAYFSKKSEL  480
ENQKLNQQGN KETRDQIQQP ESLVAYLSIN NDQTLNAASG GRRNKRIDSH KATPDIVGVH  540
NNKTSEKELE SSRETTHLMD NVHGTESCDE CNTTTSCDPK AKISLIGIRR QKKGRYGAVI  600
TDRIKHKRVW LGTFDTVEEA SQAYFSKKSE LERLGQQGNQ ENKLKDCDQV QQPESPVLPS  660
VSVANHDQTL NTSRVRRRNE KIDSHKTRTR FFRVHKRKDS GKYTSEIRNP ISKKRIWLGT  720
FGTAEDAFQA YQSKKLEFDR LVHAKRQRGN EQTHSTQDEK LEKLVNAESR HVNVNRELES  780
AGGSDINVPI SNSSNGGNEE RIDSHEISTA EEAFHAYQSK KLDLQSSKKA ELQSYMPTDS  840
SAGEKQEGQE DDENLWKGEW MQLPGDNKAV KFSLKLGLPI IDNYGSLLGE FSTLDDLSLC  900
KTDYDNET*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.10.0PREDICTED: uncharacterized protein LOC107864446
TrEMBLA0A3Q7HWF60.0A0A3Q7HWF6_SOLLC; Uncharacterized protein
STRINGSolyc08g081650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-12ERF family protein