PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g080580.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 482aa MW: 54348.1 Da PI: 7.9677 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.9e-18 | 57 | 100 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd ll ++v+++ g++Wk+Ia++++ gRt+ qc +rwqk+l Sopim08g080580.0.1 57 WTEEEDNLLTEVVERFKGRNWKRIAECLN-GRTDVQCLHRWQKVL 100 *****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.9 | 6.4e-20 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+l++++v+++G + W++Ia+ ++ gR +kqc++rw+++l Sopim08g080580.0.1 106 KGPWTKEEDDLIIELVEKHGCKKWSSIANSLP-GRIGKQCRERWHNHL 152 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.7 | 9.7e-17 | 158 | 202 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++WT++E+ l ++++++G++ W++Ia+ ++ gRt++ +k++w++ Sopim08g080580.0.1 158 KDAWTEQEEMVLCHYHQLYGNK-WAKIAKFLP-GRTDNAIKNHWNST 202 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.938 | 47 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 53 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 56 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 57 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 57 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-13 | 57 | 100 | No hit | No description |
PROSITE profile | PS51294 | 31.612 | 101 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-33 | 103 | 199 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-17 | 105 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-19 | 106 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.85E-16 | 108 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-28 | 113 | 159 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.628 | 157 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 157 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 158 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 160 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.98E-11 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MVQVKEEAPT LDIGGFISCS SLSDSSYEAS TPRCSSEPGS SCRRSSGPTK RSSQAGWTEE 60 EDNLLTEVVE RFKGRNWKRI AECLNGRTDV QCLHRWQKVL NPELVKGPWT KEEDDLIIEL 120 VEKHGCKKWS SIANSLPGRI GKQCRERWHN HLDPTITKDA WTEQEEMVLC HYHQLYGNKW 180 AKIAKFLPGR TDNAIKNHWN STLKKRLNLN LLSRLVPDIK SEGSPDFSTH KKNMEIKKHP 240 TQAHNAETVF LSEQTGVGNA ADACPTDLRI GSANSPQNGL HKGTSSLGTC KSSEQKERDL 300 IKQFGGIQFV KAEILPIGET DKQCQSTLSL TKISYPLLDS SLDARLDPSH NTGWSSSQVE 360 AVRPTSFGSM YESPKRSRYD AANDPDHDFL SLSLAAFTEV SYGNKKNRTY DTQYSLALNQ 420 PGRLCYEPPK VKDLMISSMD EKLSKDNFIG ICVKELRNEL HKNSFNHKEE EFKNCRSFWS 480 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-65 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-65 | 57 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 376 | ESPKRS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009285 | 0.0 | AP009285.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0235H18, complete sequence. | |||
GenBank | AP009601 | 0.0 | AP009601.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0023D06, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245633.1 | 0.0 | transcription factor MYB3R-4-like | ||||
Refseq | XP_010325422.1 | 0.0 | transcription factor MYB3R-4-like | ||||
TrEMBL | A0A3Q7HVU0 | 0.0 | A0A3Q7HVU0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g080580.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10393 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 6e-77 | Homeodomain-like protein |