PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g080400.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 680aa    MW: 75414.9 Da    PI: 6.0816
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g080400.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4263e-1302976641374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++c+ea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+
  Sopim08g080400.0.1 297 LISLLVSCVEAIGSRNVTGVNQLIARLGQLASPRGSPVSRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDSSTALRLLNQVSPIP 386
                         5799****************************************************************98.5678888999********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v
  Sopim08g080400.0.1 387 KFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-V 472
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk+gE++aVn+vlq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds++ 
  Sopim08g080400.0.1 473 VDRLEDVRLWMLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIAF 561
                         *******************************966655444..79*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlg 361
                         +lp +s +rik+E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + yrv    +++++l+l 
  Sopim08g080400.0.1 562 GLPLDSPARIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELLQSQMLLKMYSCEDYRVTkqgNDDAALTLS 651
                         *************98.********************************************************888***94445589999** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W d+pL +vSaW+
  Sopim08g080400.0.1 652 WLDQPLCTVSAWT 664
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.084271641IPR005202Transcription factor GRAS
PfamPF035141.0E-127297664IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL  60
SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK DEFWEKGRSL KRYAEQGCID  120
DESCMSRAKR KKSNRKSGDS SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA  180
APFSFSCSGE EESVCYVPNE VISPPLPMSN NPWIESVVTE ITNFGDKNVS TSQDLAREAS  240
VSSASLDSHG LVLRPNENLG EHEVGNGSRL PNPNDRGEVV TAHNGHNNHR EDDAAELISL  300
LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII  360
PPRDLDRLDD DSSTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR  480
LWMLHVKEGE SVAVNCVLQM HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS  540
LEARLVNSLR YYAAVFDSIA FGLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG  600
KWRKLMEQGG FRCTGITERE LLQSQMLLKM YSCEDYRVTK QGNDDAALTL SWLDQPLCTV  660
SAWTPIDAAG SSSSYYQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-7330466525379Protein SCARECROW
5b3h_D4e-7330466525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245645.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A3Q7HTU50.0A0A3Q7HTU5_SOLLC; Uncharacterized protein
STRINGSolyc08g080400.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein