PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g078420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 147aa    MW: 16430.7 Da    PI: 6.3526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g078420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18858256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g+
  Sopim08g078420.0.1  8 IYHGVRKRS-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAAIAIKGH 58
                        69****888.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-13758IPR001471AP2/ERF domain
CDDcd000185.08E-34767No hitNo description
Gene3DG3DSA:3.30.730.102.2E-31866IPR001471AP2/ERF domain
SMARTSM003803.4E-36871IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21866IPR016177DNA-binding domain
PROSITE profilePS5103222.431865IPR001471AP2/ERF domain
PRINTSPR003671.5E-10920IPR001471AP2/ERF domain
PRINTSPR003671.5E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDDSKHPIYH GVRKRSWGKW VSEIREPRKK SRIWLGTFST AEMAARAHDV AAIAIKGHLA  60
LLNFPELAHQ FPIPSSKCAK DIQSAAAKAA ALNISPRNFM EKQSTDELME MPCSSEETES  120
AESSLTSNSE DPFLDLPDIL MDLTQKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-204761080Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084630.22e-83ethylene-responsive transcription factor ERF038
SwissprotQ391277e-42TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-41DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7INV41e-97A0A3Q7INV4_SOLLC; Uncharacterized protein
STRINGSolyc08g078420.1.12e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]