PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g078180.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 235aa    MW: 26558.4 Da    PI: 4.4149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g078180.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19133183255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +g+++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  Sopim08g078180.0.1 133 HYRGVRVRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEDAALAYDKAAFRMRG 183
                         8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.98E-31132191No hitNo description
Gene3DG3DSA:3.30.730.102.2E-31132191IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-23133193IPR016177DNA-binding domain
PROSITE profilePS5103223.788133191IPR001471AP2/ERF domain
SMARTSM003809.2E-38133197IPR001471AP2/ERF domain
PfamPF008471.9E-13133183IPR001471AP2/ERF domain
PRINTSPR003674.5E-10134145IPR001471AP2/ERF domain
PRINTSPR003674.5E-10157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MYSNCELEND FSVLESIRRY LLEDWEAPLT SSENSTSSEF SRSNSIESNM FSNSFDYTPE  60
IFQNDILNEG FGFGFEFETS DFIIPKLESQ MSIESPEMWN LPEFVAPLET AAEVKVETPV  120
EMTTTTTKPK AKHYRGVRVR PWGKFAAEIR DPAKNGARVW LGTYETAEDA ALAYDKAAFR  180
MRGSRALLNF PLRINSGEPD PVRVGSKRSS MSPEHCSSAS SHEEEEEGCS WNKAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-41130198270ATERF1
3gcc_A5e-41130198270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359239.11e-140PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803387e-56EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLM1CHG51e-139M1CHG5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000675351e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-41ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]