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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopim08g077960.0.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
GATA |
Protein Properties |
Length: 539aa MW: 60252.4 Da PI: 7.314 |
Description |
GATA family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim08g077960.0.1 | genome | CSHL | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GATA | 49.4 | 6.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+
Sopim08g077960.0.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
****************66666***********997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 539 aa
Download sequence Send
to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLINYTPLHA RAEPDDLEDY 60 RVSRFKNFTV KNKEVKMLKR KKSHDNPEIG ILPEYHQGFH RKALDEDTSN RSSSGSAVSN 120 TESYGQFGSA EASDLTGPAQ SNIWDATVPS RKRTCVNRPK QSSVEKLTKD LYTILHEQQS 180 SYFSGSSEED LLFESDKPMV SVEIGHGSVL IRHPSSIGRE EESEASSLSV DNKHHSSNEA 240 YSQLTTPPVN ISKGVNSSNL VIQRTQKPTV QGVEHEQFKR SKDHLEKLQI LGHHNSPLCH 300 IDLKDVLNYE EFTRHLSSDE QQQLLKYLPP VDSFSPPESL RSMFESSQFE ENLSSFQKLL 360 AEGVFDNSLS GVTVEECRNL KRFMLCYLMK SKWVEQVNLL KDMKCKNSSS SSEVAGGRNV 420 FGTGHSVNMK RPRDGQHPKN LGVNTTMKSP KRVAMKNSYE QQKEIMENDG SCFSPKSLFA 480 LPSENSFRFT NESSDQDLLL DVPSNSSFPQ AELLLPTASF AAQASTSSSS IYPHLIHP*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |