PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g076710.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 326aa    MW: 36973.3 Da    PI: 7.1323
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g076710.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEde+l d++++ G  +W +I+++ g++R++k+c++rw +yl
  Sopim08g076710.0.1 15 KGPWTSEEDEKLMDYITKNGHTNWQLIPKKAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding51.91.8e-1668113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg ++ eE+e++++++ +lG++ W++Ia +++ gRt++++k++++++l
  Sopim08g076710.0.1  68 RGEFSIEEEEIIINLHSLLGNK-WSKIAGHLP-GRTDNEIKNFYNTHL 113
                         899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-25765IPR009057Homeodomain-like
PROSITE profilePS5129426.6311066IPR017930Myb domain
SuperFamilySSF466891.16E-3012109IPR009057Homeodomain-like
SMARTSM007171.7E-141464IPR001005SANT/Myb domain
PfamPF002491.6E-161562IPR001005SANT/Myb domain
CDDcd001672.42E-111762No hitNo description
Gene3DG3DSA:1.10.10.607.3E-2666117IPR009057Homeodomain-like
PROSITE profilePS5129420.54967117IPR017930Myb domain
SMARTSM007178.1E-1567115IPR001005SANT/Myb domain
PfamPF002491.5E-1468113IPR001005SANT/Myb domain
CDDcd001673.67E-781113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRYPCCKVD ENLKKGPWTS EEDEKLMDYI TKNGHTNWQL IPKKAGLNRC GKSCRLRWTN  60
YLRPDIKRGE FSIEEEEIII NLHSLLGNKW SKIAGHLPGR TDNEIKNFYN THLRKKLLRL  120
GIDPRTHKPI SDLNLLINLS HQFTSKQNIN HHLMNNPNFP LAYALKLQAQ VTEIAKIQQL  180
VQSLFTPIST NNPLSTKFQE NYFATSSSHV ITNNVATNTH FLNALLVNSC GTIQNLDNSN  240
SCISNSSELS NYQSELNSKV DNFEGLNNNS SKTNLDYNNS LPSLITPSSP DQANDAHVNQ  300
DYDPNTFSQL NHEGIDDSFW NDIFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108020.0AP010802.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246185.10.0transcription factor MYB41-like
SwissprotQ9LDR81e-69MY102_ARATH; Transcription factor MYB102
TrEMBLA0A3Q7HTU80.0A0A3Q7HTU8_SOLLC; Uncharacterized protein
STRINGSolyc08g076710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-72myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]