PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g076590.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 491aa MW: 54986.7 Da PI: 4.9503 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.9 | 2.1e-35 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sws + +sfv++d+ efak++LpkyFkhsnf+SFvRQLn+YgF+kv ++ w+F+++ F +g+k+ Sopim08g076590.0.1 26 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPEFAKQLLPKYFKHSNFSSFVRQLNTYGFRKVGSDL---------WKFSNDGFIRGQKH 107 9********************999****************************************9887.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i r+k Sopim08g076590.0.1 108 LLKNISRRKP 117 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.8E-39 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.16E-36 | 22 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-61 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.3E-32 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MDAGGGSPVP EITPAPMPSS NAVPPFLMKT YDMVDDPSTD KIVSWSPTDS SFVIWDPPEF 60 AKQLLPKYFK HSNFSSFVRQ LNTYGFRKVG SDLWKFSNDG FIRGQKHLLK NISRRKPAHG 120 QQQQQQLHSQ SASVGACVEV GNFGLEKEVE WLKRDKNVLM QELVKLRQHQ QTTDNQMQNM 180 VQNLQIMEQR QQQMMSFLAK AVNSPGFFAQ FVQQQNDNNK RKMEGKKKRR IRQDFPSDDH 240 SVRPADGQLV KYHPIMNETA KGMLTQITKL DSSPRLENFS NSPESPPIGD AFDGRSNSRI 300 SGVTLQEVSP AFSQPFASTT SAIAGQSSLS ANIQFSESSS PIGAQNLPPI VPFSSDMIMP 360 MPSQLQEIVP ENNMDINGTE RGNDSFMDPT LWGNGELPLE NDIFPPDLQI KWESALVDDI 420 GEPPTVADPS WEKFLQSLYP PTETEEMGSV ETENDKTTET ELLGNGWYNV QHMEHLTEQM 480 GLLTSNTKKV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-27 | 5 | 115 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-27 | 5 | 115 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-27 | 5 | 115 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 229 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010802 | 0.0 | AP010802.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010325565.2 | 0.0 | LOW QUALITY PROTEIN: heat shock factor protein HSF8 | ||||
Swissprot | Q40152 | 0.0 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A3Q7HTQ4 | 0.0 | A0A3Q7HTQ4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g076590.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6413 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-127 | heat shock factor 3 |
Publications ? help Back to Top | |||
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