PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g069160.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 317aa    MW: 36259.5 Da    PI: 5.2181
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g069160.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.73.5e-091886270
            trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                        Wt +e  +L++  + ++ + +++ +  ++W++   ++ + g++rs +qCk +we++  +y k+k +e+ 
  Sopim08g069160.0.1 18 WTLHESVTLVNEMKATQIECGNSLASFQKWQSTVHNCNSLGVNRSLNQCKRRWESMLEQYNKVKPWESA 86
                        9999999999999999999****9****************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-81785No hitNo description
PROSITE profilePS500906.4351874IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MERSGGSLRT RSQAAPDWTL HESVTLVNEM KATQIECGNS LASFQKWQST VHNCNSLGVN  60
RSLNQCKRRW ESMLEQYNKV KPWESAYWDS FDEERKRELE LPEQFDFELF NAIARYLSLE  120
GEDGGGAETD PDTDPEAQQV QGNNAFLEIG PKRQRRRTKT KRYKIEERLN PWRRILNENR  180
KYEQSKMGIK HEASIDAGLE APRHENSSLE IKRETSSPEE MTELPNLSMV NKVKAEQFHV  240
DNPEELMAAT LRENAEMITA ITEGNTMDDR DCSLAGLNNF DAGRLHLIRS QGNQLIDCLG  300
KISDTLIQLC DAIHKK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109440.0AP010944.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0007C12, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245311.10.0trihelix transcription factor ASR3
TrEMBLA0A3Q7HSF90.0A0A3Q7HSF9_SOLLC; Uncharacterized protein
STRINGSolyc08g069160.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.17e-45sequence-specific DNA binding transcription factors