PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g068320.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 1039aa    MW: 114594 Da    PI: 5.0345
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g068320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-183682148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Sopim08g068320.0.1 36 KGQWTPEEDDTLCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82
                        799****************************9.************986 PP

2Myb_DNA-binding59.66.7e-1988134148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde + ++vk++G++ W+tIa++++ gR +kqc++rw+++l
  Sopim08g068320.0.1  88 KGPWSKEEDEVIGELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134
                         79******************************.*************97 PP

3Myb_DNA-binding47.34.7e-15140182145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE+  lv+a++ +G++ W+   + ++ gRt++ +k++w+
  Sopim08g068320.0.1 140 KEAWTQEEEMTLVHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 182
                         579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.763182IPR017930Myb domain
SuperFamilySSF466894.67E-183496IPR009057Homeodomain-like
SMARTSM007171.8E-143584IPR001005SANT/Myb domain
PfamPF002498.5E-163682IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-223794IPR009057Homeodomain-like
CDDcd001676.86E-133982No hitNo description
PROSITE profilePS5129433.19983138IPR017930Myb domain
SuperFamilySSF466895.24E-3185181IPR009057Homeodomain-like
SMARTSM007175.8E-1787136IPR001005SANT/Myb domain
PfamPF002497.1E-1788134IPR001005SANT/Myb domain
CDDcd001672.83E-1590134No hitNo description
Gene3DG3DSA:1.10.10.604.1E-2795141IPR009057Homeodomain-like
SMARTSM007174.5E-14139187IPR001005SANT/Myb domain
PROSITE profilePS5129418.388139189IPR017930Myb domain
PfamPF002495.4E-13140183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-21142189IPR009057Homeodomain-like
CDDcd001677.73E-11142182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1039 aa     Download sequence    Send to blast
MESDRISTPS DGTSNSYQRV RPLHGRTSGP TRRSTKGQWT PEEDDTLCKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIG ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEEMT LVHAHQIYGN KWAELTKFLP GRTDNAIKNH  180
WNSSVKKKLD TFLTSAPLAQ FPALPIVNHQ NQSIRSSIKL QQSSEDDSVR KEGTEMEEVS  240
ECSQGSNLAG CSQSTSDMGN TFAHTREEGK LLEDSNYRKD PSASSAPCSE YYTPAFEDIT  300
FSVEEVPSEL AESKLLEHNF SHDWATSMGK DWQFNPDDIP NVSPLELMQD SSGLFMQCLT  360
GTENHDMVSF PQQNGMKFET TNDGSMVVGL HQPNEMFTSV EGFRMVYPEA EIPQCFPSET  420
AMNGVDETAG SLIYQISEGG NMSIENCNPL CSDVMGTSSC QPCSVPSQFS SEQSSFMFGI  480
ASNQFHNPPH PAHESQTSKC DSFPYPIESD SPCDNIMDDP LLKDQLDQTK DSVQLVSVND  540
FGSTSSNTIQ TCPMVNGNSA VKEEKKDGGA LCYEPPRFPS LDVPFFSCDL IQSGTDTQQE  600
FSPLGIRQLM MTSVNCLTPF RLWDSPKRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP  660
LSEKRCGKKL ESDLRRESFS NLAKDFSRLD VMFDDSANEK AMSSLTKDQT VELQASDEDK  720
ENINPTEDGR KEEDKGCNGH SICGTSGRQL DGGEVHYKDQ GTREGKRIGA NAAIGKIKQP  780
SGVLVELNAS DLFFSPDRFG ANADRATNLS NKALGNQYAR RIEAASNQGS VSSSFETSCF  840
SVICSPRIRG KKDGSSFVIT TSMQSAPTST ALENSAETSG NGVGAETVSI SGETPYKRSI  900
ESPSAWKSPW IFTPFLSSPR LDNELTFEDL ALFMSPGDRS YDAIGLMKQL SEQTAGAFAD  960
AQEVLGGDTP ETILRGRNSK NQKADENHSL LSANAMSERR TLDFSECGSP GKGKETEKCC  1020
SSNNSFSSPS SYLLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67361896159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67361896159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092960.0AP009296.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0018I16, complete sequence.
GenBankAP0094810.0AP009481.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0066I05, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245265.10.0transcription factor MYB3R-1-like
TrEMBLA0A3Q7HRX50.0A0A3Q7HRX5_SOLLC; Uncharacterized protein
STRINGSolyc08g068320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-122Homeodomain-like protein