PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g068320.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 1039aa MW: 114594 Da PI: 5.0345 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.9e-18 | 36 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Sopim08g068320.0.1 36 KGQWTPEEDDTLCKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 6.7e-19 | 88 | 134 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde + ++vk++G++ W+tIa++++ gR +kqc++rw+++l Sopim08g068320.0.1 88 KGPWSKEEDEVIGELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.3 | 4.7e-15 | 140 | 182 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ lv+a++ +G++ W+ + ++ gRt++ +k++w+ Sopim08g068320.0.1 140 KEAWTQEEEMTLVHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 182 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.76 | 31 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-18 | 34 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 35 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-16 | 36 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 37 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.86E-13 | 39 | 82 | No hit | No description |
PROSITE profile | PS51294 | 33.199 | 83 | 138 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 85 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-17 | 87 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 88 | 134 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.83E-15 | 90 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-27 | 95 | 141 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 139 | 187 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.388 | 139 | 189 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.4E-13 | 140 | 183 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 142 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.73E-11 | 142 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1039 aa Download sequence Send to blast |
MESDRISTPS DGTSNSYQRV RPLHGRTSGP TRRSTKGQWT PEEDDTLCKA VQRFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIG ELVKKYGPKK WSTIAQHLPG 120 RIGKQCRERW HNHLNPGINK EAWTQEEEMT LVHAHQIYGN KWAELTKFLP GRTDNAIKNH 180 WNSSVKKKLD TFLTSAPLAQ FPALPIVNHQ NQSIRSSIKL QQSSEDDSVR KEGTEMEEVS 240 ECSQGSNLAG CSQSTSDMGN TFAHTREEGK LLEDSNYRKD PSASSAPCSE YYTPAFEDIT 300 FSVEEVPSEL AESKLLEHNF SHDWATSMGK DWQFNPDDIP NVSPLELMQD SSGLFMQCLT 360 GTENHDMVSF PQQNGMKFET TNDGSMVVGL HQPNEMFTSV EGFRMVYPEA EIPQCFPSET 420 AMNGVDETAG SLIYQISEGG NMSIENCNPL CSDVMGTSSC QPCSVPSQFS SEQSSFMFGI 480 ASNQFHNPPH PAHESQTSKC DSFPYPIESD SPCDNIMDDP LLKDQLDQTK DSVQLVSVND 540 FGSTSSNTIQ TCPMVNGNSA VKEEKKDGGA LCYEPPRFPS LDVPFFSCDL IQSGTDTQQE 600 FSPLGIRQLM MTSVNCLTPF RLWDSPKRDG SPDAVLRSAA KTFTSTPSIL KKRHRDLVSP 660 LSEKRCGKKL ESDLRRESFS NLAKDFSRLD VMFDDSANEK AMSSLTKDQT VELQASDEDK 720 ENINPTEDGR KEEDKGCNGH SICGTSGRQL DGGEVHYKDQ GTREGKRIGA NAAIGKIKQP 780 SGVLVELNAS DLFFSPDRFG ANADRATNLS NKALGNQYAR RIEAASNQGS VSSSFETSCF 840 SVICSPRIRG KKDGSSFVIT TSMQSAPTST ALENSAETSG NGVGAETVSI SGETPYKRSI 900 ESPSAWKSPW IFTPFLSSPR LDNELTFEDL ALFMSPGDRS YDAIGLMKQL SEQTAGAFAD 960 AQEVLGGDTP ETILRGRNSK NQKADENHSL LSANAMSERR TLDFSECGSP GKGKETEKCC 1020 SSNNSFSSPS SYLLKGCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-67 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-67 | 36 | 189 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009296 | 0.0 | AP009296.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08SLe0018I16, complete sequence. | |||
GenBank | AP009481 | 0.0 | AP009481.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0066I05, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245265.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A3Q7HRX5 | 0.0 | A0A3Q7HRX5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g068320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-122 | Homeodomain-like protein |