PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g067150.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

CPP

Protein Properties

Length: 989aa MW: 106536 Da PI: 6.6326

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g067150.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.7	1.5e-15	550	588	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag++C ++C+C++C+N+ e Sopim08g067150.0.1 550 CKRCNCKKTKCLKLYCDCFAAGVYCVDSCTCQGCFNRPE 588 79**********************************876 PP
2	TCR	50.4	4.3e-16	637	675	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cs+ C+Ce+CkN Sopim08g067150.0.1 637 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 675 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.6E-15	548	589	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.298	549	677	IPR005172	CRC domain
Pfam	PF03638	2.0E-11	551	586	IPR005172	CRC domain
SMART	SM01114	3.5E-17	637	678	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-11	639	674	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MDSPEPSSKI NATINTTLSS DPGPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL 60 LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNTAI TDSDGTGVFI SPLGSGLSPF 120 VQKVSDNNIS VHEQSGTPIS CVDEFLVDVS NSESGDSSNS NNKSPKVADS IPQPPDSAED 180 SKVPVVSIPS KDERKDEIPE DAARVVVEQA EEDNKGKSPS NQKYTGVYST SNPDLPSLGL 240 CAKIVPGLDA HSSLHNHYGD RQMAQLSRAG HTVLDEASNI PIKSLETAGD CRDDNDKIST 300 MSIVPDDGIL QHDSQTKASQ HQSGISRRCL QFEDAQQKMA PASSSSQNAS GIVSCSIQPV 360 SPAVIEVVEP VSSNRSSTTS NRRLTQLVSS SVNSESLNVK VSKPSGIGLH LNSIVNGMEA 420 GSGVTVSVKS TQRGNLSIRG KKLTSMMSCH PSKNLKNCLI SANVVGSNLT SDNDGIHESY 480 RSDAESAAAS LSHNNAKLLN DTVLLKPTEH TPSNKRKLNS EHIDSNMDYN QSSPQKKRKK 540 ISDGNDGDGC KRCNCKKTKC LKLYCDCFAA GVYCVDSCTC QGCFNRPEYE DTVLDVRQQI 600 QSRNPLAFAP KIVQHSTNSP ANILGEGVAS FTPSSARHKR GCNCKKSMCL KKYCECYQAN 660 VGCSSGCRCE GCKNVFGPKE EYGIDLVNKH CITESLERSV EEEVEMVTAT SGLLQSGPIN 720 QCNSTPLTPS FRRSNNVDAS KSWFTSGRYL SSPESGQADT APYGLSPGSP RSSNNHDTHQ 780 ETIGDMLDLV TFDHELSYGN AKLANEISPG FNVTGNMDDI LALPKSQDWA SNSGGQLIPQ 840 TVHFQSTDPL SWRNSPMTHM TQFDGSGMNA LELLDSDKKP YVLEDDTPEI LKDSSIPQIG 900 VKVNSPNKKR VSPPYRHLNE IGSSSSGGGL KTGRKFILRA VPSFPPLSPC IQSKNVAAHS 960 TDNSEKDTNM CYQKSEITDC NKLFRNTK*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MDSPEPSSKI NATINTTLSS DPGPAQDSPV FNYISNLSPI QPVKGAPIVQ DFSGLNSPPL  60
LLTSPRINTH SRSSLLKRSQ FPKLSTEVFS GKNEDYNTAI TDSDGTGVFI SPLGSGLSPF  120
VQKVSDNNIS VHEQSGTPIS CVDEFLVDVS NSESGDSSNS NNKSPKVADS IPQPPDSAED  180
SKVPVVSIPS KDERKDEIPE DAARVVVEQA EEDNKGKSPS NQKYTGVYST SNPDLPSLGL  240
CAKIVPGLDA HSSLHNHYGD RQMAQLSRAG HTVLDEASNI PIKSLETAGD CRDDNDKIST  300
MSIVPDDGIL QHDSQTKASQ HQSGISRRCL QFEDAQQKMA PASSSSQNAS GIVSCSIQPV  360
SPAVIEVVEP VSSNRSSTTS NRRLTQLVSS SVNSESLNVK VSKPSGIGLH LNSIVNGMEA  420
GSGVTVSVKS TQRGNLSIRG KKLTSMMSCH PSKNLKNCLI SANVVGSNLT SDNDGIHESY  480
RSDAESAAAS LSHNNAKLLN DTVLLKPTEH TPSNKRKLNS EHIDSNMDYN QSSPQKKRKK  540
ISDGNDGDGC KRCNCKKTKC LKLYCDCFAA GVYCVDSCTC QGCFNRPEYE DTVLDVRQQI  600
QSRNPLAFAP KIVQHSTNSP ANILGEGVAS FTPSSARHKR GCNCKKSMCL KKYCECYQAN  660
VGCSSGCRCE GCKNVFGPKE EYGIDLVNKH CITESLERSV EEEVEMVTAT SGLLQSGPIN  720
QCNSTPLTPS FRRSNNVDAS KSWFTSGRYL SSPESGQADT APYGLSPGSP RSSNNHDTHQ  780
ETIGDMLDLV TFDHELSYGN AKLANEISPG FNVTGNMDDI LALPKSQDWA SNSGGQLIPQ  840
TVHFQSTDPL SWRNSPMTHM TQFDGSGMNA LELLDSDKKP YVLEDDTPEI LKDSSIPQIG  900
VKVNSPNKKR VSPPYRHLNE IGSSSSGGGL KTGRKFILRA VPSFPPLSPC IQSKNVAAHS  960
TDNSEKDTNM CYQKSEITDC NKLFRNTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-22	551	674	12	120	Protein lin-54 homolog
5fd3_B	1e-22	551	674	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	535	539	KKRKK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245198.2	0.0	protein tesmin/TSO1-like CXC 4 isoform X1
TrEMBL	A0A3Q7HP37	0.0	A0A3Q7HP37_SOLLC; Uncharacterized protein
STRING	Solyc08g067150.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6980	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	8e-63	TESMIN/TSO1-like CXC 2