PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g066500.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 828aa    MW: 90981.1 Da    PI: 5.7958
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g066500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46.1e-19563357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sopim08g066500.0.1  5 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                        5678*****************************************************97 PP
2START177.11.1e-551503582205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  g+
  Sopim08g066500.0.1 150 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGngGT 239
                         7899******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+  Ry+  +++g++vi+++S++++q+ p+    +s+vRa  lpSg+li+p+++g+s +++v+h+dl+ +++
  Sopim08g066500.0.1 240 IELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLEPWSV 330
                         ***********************************************9998899************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s++   ++t++a+l+++++
  Sopim08g066500.0.1 331 PEVLRPLYESSTLLSQRTTMAALRHLRQ 358
                         ***********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.742164IPR001356Homeobox domain
SMARTSM003896.8E-16268IPR001356Homeobox domain
CDDcd000861.22E-16565No hitNo description
SuperFamilySSF466891.45E-16566IPR009057Homeodomain-like
PfamPF000461.6E-16663IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-19763IPR009057Homeodomain-like
CDDcd146868.21E-65796No hitNo description
PROSITE profilePS5084825.755140368IPR002913START domain
CDDcd088752.38E-80144359No hitNo description
SMARTSM002349.8E-40149359IPR002913START domain
Gene3DG3DSA:3.30.530.208.1E-22150355IPR023393START-like domain
PfamPF018525.6E-53150358IPR002913START domain
SuperFamilySSF559616.46E-37150360No hitNo description
PfamPF086703.8E-50684826IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MDSGKYVRYT PEQVEALERL YHECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSFFRQQTQ TAALATTDNN  120
SCESVVTSGQ HNLTPQRPPR DASPAGLLSL AEETLTEFLS KATGTAVEWV QMPGMKPGPD  180
SIGIIAISHG CSGVASRACG LVGLEPTRVA EILKDRPSWF RDCRAVDVLN VMSTGNGGTI  240
ELLYMQLYAP TTLAPARDFW LMRYTSVMED GSLVICERSL NNTQNGPSMP PVQSFVRADI  300
LPSGYLIRPC EGGGSIIHIV DHMDLEPWSV PEVLRPLYES STLLSQRTTM AALRHLRQIS  360
QEISHPTVSG WGRRPAALRA LGQRLSKGFN EAVNGFTDEG WSMLESDGVD DVTILVNSSP  420
SKLMGANISY ANGFPSMSSA VLCAKASMLL QNVPPPILLR FLREHRSEWA DSGIDAYSAA  480
AVKAGPCSIP VTRTGSFGGQ IILPLAHTIE HEEFMEVIRL ESIGHYQDDM IMPSDIFLLQ  540
LCNGVDENAI GTCAELMFAP IDASFADDAP LLPSGFRIIP LDSKADASSP NRTLDLASTL  600
EVGPAGSRPT GDHSKNSGSA KSVMTIAFQF AFEIHLQESI AAMARQYVRS IISSVQRVAL  660
ALSPSRIGSL PGLRSPPGTP EAQTLARWIC QSYRFFLGVE LLKSASGGSE SILKEIWDHS  720
DALMCCSMKA LPVFTFANEA GLDMLETTLV ALQDISLEKI FDDNGRKALY SELPQIMQQG  780
FACLQGGICL SSMGRPISYE RAVAWKVLNE EEDAHCICFM FINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245155.10.0homeobox-leucine zipper protein ATHB-15 isoform X2
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A3Q7HQY20.0A0A3Q7HQY2_SOLLC; Uncharacterized protein
STRINGSolyc08g066500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]