PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g065910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 214aa    MW: 24055.9 Da    PI: 6.1311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g065910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l++ +  +G++ +W + +++ g++R++k+c++rw++yl
  Sopim08g065910.0.1 14 RGQWSPEEDEILKNHIFNHGNPgSWIALPKRAGLNRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding49.31.2e-1569111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g++T++Ed  +  + +qlG++ W+ Ia++++ gRt++++k++w++
  Sopim08g065910.0.1  69 GNFTQDEDNTICSLYNQLGSR-WSVIASKLP-GRTDNEIKNHWNT 111
                         79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-21565IPR009057Homeodomain-like
PROSITE profilePS5129412.209962IPR017930Myb domain
SuperFamilySSF466892.89E-2612109IPR009057Homeodomain-like
SMARTSM007174.4E-101364IPR001005SANT/Myb domain
PfamPF002493.4E-141462IPR001005SANT/Myb domain
CDDcd001672.68E-71762No hitNo description
PROSITE profilePS5129421.0963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2366117IPR009057Homeodomain-like
SMARTSM007173.4E-1367115IPR001005SANT/Myb domain
PfamPF002491.5E-1369111IPR001005SANT/Myb domain
CDDcd001676.16E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVRAPCCDKS KVKRGQWSPE EDEILKNHIF NHGNPGSWIA LPKRAGLNRC GKSCRLRWLN  60
YLRPNIKLGN FTQDEDNTIC SLYNQLGSRW SVIASKLPGR TDNEIKNHWN TKLKKKVSAT  120
KEAMKLPIPS SDSADKNMVE TGEKNPRFTQ EEDHSKISPS IEGSTSFETC SSPLDDLAWF  180
ESFFPMDSNT SDGIWSTQQD GIDDFPSDDL LGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092860.0AP009286.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0239G21, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245380.11e-158transcription factor MYB36-like
SwissprotQ9M2Y95e-57RAX3_ARATH; Transcription factor RAX3
TrEMBLK4CLH01e-156K4CLH0_SOLLC; Uncharacterized protein
STRINGSolyc08g065910.1.11e-157(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-59myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]