PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g065130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 302aa    MW: 33614.5 Da    PI: 9.9455
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g065130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.43.1e-3542140199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rr+Ca+dC lapyfp e++k+f nvhklFG+sn+lkllk++++ +r+++m+sl++eA++ra d v G++++i++l++ ++  +
  Sopim08g065130.0.1  42 ACAACKYQRRRCAPDCLLAPYFPVERNKEFLNVHKLFGVSNLLKLLKNVQPFQRDTTMKSLIFEANIRAGDLVGGCYRIIMNLERLINFYE 132
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         +el+ + +
  Sopim08g065130.0.1 133 TELQFTYN 140
                         *9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.42541142IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3442137IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTHIVNHNQN VSSSPLNTTT TTSTRVAHRG GGGGSGGNGS QACAACKYQR RRCAPDCLLA  60
PYFPVERNKE FLNVHKLFGV SNLLKLLKNV QPFQRDTTMK SLIFEANIRA GDLVGGCYRI  120
IMNLERLINF YETELQFTYN EIFRVQAVDI QNNINRTTVN TNTTDVQVMN SIGGFHRSEE  180
IDGFGDYSMS GFGDSSKRIN SISSLNSQII KIELLDDIKD EFAVRQGEFE TKVAISSSKD  240
KQSMVENGDL KPYFGKNCKG KALARCMIMN GAKGLRKKIK TKLKGVIQLK KIMSFHLNIS  300
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-27351445113LOB family transfactor Ramosa2.1
5ly0_B2e-27351445113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070701.10.0LOB domain-containing protein 12-like
TrEMBLM1DU551e-121M1DU55_SOLTU; Uncharacterized protein
STRINGSolyc08g065130.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA142941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-37LOB domain-containing protein 22