PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g062530.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 83aa MW: 9469.56 Da PI: 6.7912

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g062530.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.4e-19	26	77	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++L ++F+k++ +++++ ++L ++ gL+ +qVk+WFqNrRa+ k Sopim08g062530.0.1 26 HKYSMEQIQILDAFFKKCPQLDEDQQKQLGSEAGLDHKQVKFWFQNRRAQAK 77 6899*********************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-18	5	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-16	8	77	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-6	16	82	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.799	19	79	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	26	77	IPR001356	Homeobox domain
CDD	cd00086	6.60E-13	26	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MTDSGEEPAG ESSNSQKRSE SHGQYHKYSM EQIQILDAFF KKCPQLDEDQ QKQLGSEAGL 60 DHKQVKFWFQ NRRAQAKVIL II*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010930	2e-69	AP010930.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence.
GenBank	HG975520	2e-69	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886908.1	3e-39	homeobox-leucine zipper protein HDG8-like isoform X2
Swissprot	Q69T58	2e-19	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A3Q7H9V3	2e-44	A0A3Q7H9V3_SOLLC; Uncharacterized protein
TrEMBL	A0A3Q7HMI1	6e-43	A0A3Q7HMI1_SOLLC; Uncharacterized protein
STRING	Solyc08g062530.1.1	8e-55	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA29007	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17320.1	1e-18	homeodomain GLABROUS 9