PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g062510.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 654aa MW: 73928.4 Da PI: 6.1252 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 26 | 77 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++L ++F+k+++p++++ ++L ++ gL+ +qVk+WFqNrRa+ k Sopim08g062510.0.1 26 HKHSMEQIQILDAFFKKCPHPDEDQQKQLGSEAGLDHKQVKFWFQNRRAQAK 77 57899********************************************998 PP | |||||||
2 | START | 109 | 7.3e-35 | 175 | 393 | 5 | 206 |
HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 + ++e v + + ++p+Wv ss +++ ++f +++v +++e ++++g+v m++++l +ld +W + ++ Sopim08g062510.0.1 175 ASMNEMVELWKMNDPFWVDSSsdrrcfiH---HEIYGRNF-SNQVlppqtstCRIESSKDCGIVSMTAVELIHNFLDPV-KWMNLFPtivt 260 679999999************77754331...44444455.33445777789**************************9.99999999999 PP EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS START 78 kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163 ka+t+ev++sg g qlm+ +l lsplv R+f+f+R +rql a +w+ vd+S d ++ ++ +s+ ++pSg+ i++++ng sk Sopim08g062510.0.1 261 KAKTIEVVDSGtwgGSMQLMYEKLHILSPLVEaREFLFIRGCRQLDATTWIMVDISYDIFNDIQSgVPSYSW--KFPSGCAIQDMGNGQSK 349 *******************************99***********************9998888766667765..9**************** PP EEEEE-EE-.-SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdl.kgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwvehv + +++++ ++r l+ + a gak+w tlqr ce+ Sopim08g062510.0.1 350 VTWVEHVQVyEKYHVNHIFRDLLCDREAYGAKRWIVTLQRMCER 393 *******96267789***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 5 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-12 | 16 | 83 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 14.592 | 19 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.4E-15 | 24 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.7E-15 | 26 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-13 | 29 | 77 | No hit | No description |
PROSITE profile | PS50848 | 32.273 | 162 | 396 | IPR002913 | START domain |
CDD | cd08875 | 1.23E-75 | 166 | 392 | No hit | No description |
SuperFamily | SSF55961 | 2.33E-21 | 169 | 394 | No hit | No description |
SMART | SM00234 | 4.2E-19 | 171 | 393 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-28 | 175 | 393 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.9E-4 | 231 | 356 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.15E-10 | 415 | 616 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MTDSGEEPAG ESSNSQKRSE SHGQYHKHSM EQIQILDAFF KKCPHPDEDQ QKQLGSEAGL 60 DHKQVKFWFQ NRRAQAKDEK VSSLISHVFG RPFVMDSNLA PQISTLGSPS NSSDGSLLNE 120 DTRGSPIIYP PLRQENNQNS NNFHAHSMIS QSPQEHDECN HDSRQQTIMF ETVVASMNEM 180 VELWKMNDPF WVDSSSDRRC FIHHEIYGRN FSNQVLPPQT STCRIESSKD CGIVSMTAVE 240 LIHNFLDPVK WMNLFPTIVT KAKTIEVVDS GTWGGSMQLM YEKLHILSPL VEAREFLFIR 300 GCRQLDATTW IMVDISYDIF NDIQSGVPSY SWKFPSGCAI QDMGNGQSKV TWVEHVQVYE 360 KYHVNHIFRD LLCDREAYGA KRWIVTLQRM CERFNFQMGS TYPNRHDSKG VFHDPEGLKN 420 TIQVSQRMVK KFFEILSMTD NHGDFSISPQ LNRGDRISIV KNEETIQPKG FIAIATTSLW 480 LPLSFQDVFS FFNDYKTRNQ WDILTGGNNV IELDRVLTGT FPGNNITVIQ PYNMHKEMLV 540 LEETSIDEMG AFLVYAPIDL RAINSIVNGG DATKVPFLPS GIIISPDGRL SSNRDSTPNA 600 QNGSILTVTF QIMICGNNNP TSRQQKMEVV GSVHGVLSAT ILRIKEALGC SDL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010930 | 0.0 | AP010930.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019071156.1 | 0.0 | homeobox-leucine zipper protein HDG8-like | ||||
TrEMBL | A0A3Q7HMI1 | 0.0 | A0A3Q7HMI1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g062510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1021 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 1e-127 | homeodomain GLABROUS 8 |