PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g062200.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 753aa MW: 84609.2 Da PI: 6.9253

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g062200.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.3	3.6e-19	256	306	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k ++++d + y +l+i++A +L++c+Tv+Kr CR+ G++RWP+Rki+s+ Sopim08g062200.0.1 256 TKMMNVKDFEDYLHLSIQEAGIKLNLCPTVMKRVCRRDGLRRWPSRKINSI 306 688999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.971	246	326	IPR003035	RWP-RK domain
Pfam	PF02042	8.4E-17	259	306	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MDNFDTSIVP YHDPFDDNIL TGLNFSLFDD ENPTIDGDIN YQVPINLNPT IVGGDNNNHQ 60 GPPINENKTN LNYSLSFPDY DPYLLEISFD SGDGFIGGST NPEGEVPGNN NCQILREIIH 120 DNGMILSKIG IFGTIGRISH AIVEKSTMDD HMSSDTIDFS NDSISKVKEF LVQYFEGCKK 180 DGYIVLEDTL SEFYQTLSVN SGVRTNDINN LLQLSTTNLH HNVLTEQQGM ANENEGTNSG 240 VNRGKISLSE QQRRRTKMMN VKDFEDYLHL SIQEAGIKLN LCPTVMKRVC RRDGLRRWPS 300 RKINSIKRKI SKRQESLNSI HAGERKSAKA DIAKLEKELA AIYNDLTYSL TKRVHQCLIY 360 MKLLRLLKKY YCSIFKKKMA SVEKVVGVKK VRQKDSDGWD VSMPLPGDII EGVAELASDD 420 DSFIQAKAWS ELTLFLGKIA GHFIWFKVRR GESTLKLKGY VLVERRSNLQ KRFVVRAASD 480 ERHLAVIAEL TLGRCTELQE MSRRMVNSGS RGYNQMGLQY DWKMKVGTYL PDSHSTVVSS 540 IVFMPLTREY RVEATLVRTM AWFSAAVSSG IPLVFVNIQT EQINNLERRN TSGKDVCSRQ 600 LDGYVGYHQS AQGVRLWYLP GIEEVPLELT PEPGESRFGI DIKRTDEGFV SIYSVAKGTA 660 AERAGLVHLF EEANKSKHHV VISRLEGKSV LPSTVSSEGL IYCCDHADIK DTLDLAMERS 720 ESIRLHIMSW PNQITQNTIG LFGAAAALMP PN*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MDNFDTSIVP YHDPFDDNIL TGLNFSLFDD ENPTIDGDIN YQVPINLNPT IVGGDNNNHQ  60
GPPINENKTN LNYSLSFPDY DPYLLEISFD SGDGFIGGST NPEGEVPGNN NCQILREIIH  120
DNGMILSKIG IFGTIGRISH AIVEKSTMDD HMSSDTIDFS NDSISKVKEF LVQYFEGCKK  180
DGYIVLEDTL SEFYQTLSVN SGVRTNDINN LLQLSTTNLH HNVLTEQQGM ANENEGTNSG  240
VNRGKISLSE QQRRRTKMMN VKDFEDYLHL SIQEAGIKLN LCPTVMKRVC RRDGLRRWPS  300
RKINSIKRKI SKRQESLNSI HAGERKSAKA DIAKLEKELA AIYNDLTYSL TKRVHQCLIY  360
MKLLRLLKKY YCSIFKKKMA SVEKVVGVKK VRQKDSDGWD VSMPLPGDII EGVAELASDD  420
DSFIQAKAWS ELTLFLGKIA GHFIWFKVRR GESTLKLKGY VLVERRSNLQ KRFVVRAASD  480
ERHLAVIAEL TLGRCTELQE MSRRMVNSGS RGYNQMGLQY DWKMKVGTYL PDSHSTVVSS  540
IVFMPLTREY RVEATLVRTM AWFSAAVSSG IPLVFVNIQT EQINNLERRN TSGKDVCSRQ  600
LDGYVGYHQS AQGVRLWYLP GIEEVPLELT PEPGESRFGI DIKRTDEGFV SIYSVAKGTA  660
AERAGLVHLF EEANKSKHHV VISRLEGKSV LPSTVSSEGL IYCCDHADIK DTLDLAMERS  720
ESIRLHIMSW PNQITQNTIG LFGAAAALMP PN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009518	0.0	AP009518.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0067I16, complete sequence.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010325012.1	0.0	uncharacterized protein LOC104648819
TrEMBL	A0A3Q7HPR4	0.0	A0A3Q7HPR4_SOLLC; Uncharacterized protein
STRING	Solyc08g062200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-08	Nin-like family protein