PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g061140.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HB-other | ||||||||
Protein Properties | Length: 336aa MW: 37905.9 Da PI: 4.9095 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.5 | 6.2e-10 | 270 | 317 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + ++L+ r+V WF rR Sopim08g061140.0.1 270 RLKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRRRVLKWFEERRS 317 57899******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.977 | 262 | 322 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.15E-10 | 264 | 327 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.59E-7 | 265 | 316 | No hit | No description |
SMART | SM00389 | 2.2E-4 | 268 | 326 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-9 | 270 | 319 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.9E-7 | 270 | 317 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MASSSTTLGI SIRLGCSSNE HLMLVHPRSR TNIALLFHSY SSRLVTFSRR RNNSAITSSN 60 KKKKSPPRKD TEEVGDIDED AFEALFQLLE EDLKNDELSL DDDDITEEDL AKLERELEEA 120 LKDDELLGEI DSIANENTES SMAKDEEAVA EDANGDDDDE DVDMLVKLKN WQLKKLAYAL 180 KKGRRKLNIK NLAADLCLDR AVVLEMLRNP PPNLVLLSAA LPDEPVPRML EAASKPLETV 240 PIEMSDAVKP DAKVETPVHV MQSNWSAQKR LKKVQLETLE QVYRRSKRPT NAMISSIVHV 300 TNLPRRRVLK WFEERRSEEG VPAHRLPYQP SSISE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 63 | RRRNNSAITSSNKKKK |
2 | 179 | 186 | LKKGRRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009265 | 0.0 | AP009265.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0027D09, complete sequence. | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004245032.1 | 0.0 | protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
Swissprot | Q8H0V5 | 8e-69 | OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 | ||||
TrEMBL | A0A3Q7HP78 | 0.0 | A0A3Q7HP78_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g061140.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9428 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11270.1 | 2e-67 | overexpressor of cationic peroxidase 3 |
Publications ? help Back to Top | |||
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