PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g028850.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 109aa    MW: 12280 Da    PI: 8.7275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g028850.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.62.2e-149108292
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk......kvkaeek...ewyfFskrdkkyatgkrknratksg 81 
                           GfrF+Ptd e v  +L + ++gk ++++ +  ++vd y+  ePwd+ +      + +++++   ++ fF+++ kk+ +++ +  + ++g
  Sopim08g028850.0.1   9 KEGFRFSPTDTEAV-TFLLRLIAGKFMNVSGFiTTHVDTYSKqEPWDICShgvpycN-YNGDNdcsQYPFFITKLKKKGKSRYSGDVGNKG 97 
                         68************.8999*******99999834556877544*****634677743.3444424244588888888887767777999** PP

                 NAM  82 yWkatgkdkev 92 
                          Wk++gk+k+v
  Sopim08g028850.0.1  98 CWKHQGKSKPV 108
                         *******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-117108IPR003441NAC domain
PROSITE profilePS5100515.1678108IPR003441NAC domain
PfamPF023658.8E-710106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MECIIENLKE GFRFSPTDTE AVTFLLRLIA GKFMNVSGFI TTHVDTYSKQ EPWDICSHGV  60
PYCNYNGDND CSQYPFFITK LKKKGKSRYS GDVGNKGCWK HQGKSKPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086LKKKGKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169693.16e-54PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3Q7IH215e-76A0A3Q7IH21_SOLLC; Uncharacterized protein
STRINGSolyc08g028850.1.18e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-08NAC domain containing protein 20