PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g013900.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 962aa MW: 106182 Da PI: 5.351

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g013900.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.6e-28	556	607	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++k+AA+++gvc+T+LKriCRqyGI+RWP+Rki+++ Sopim08g013900.0.1 556 AEKHVSLSVLQQYFSGSLKNAAQSIGVCPTTLKRICRQYGISRWPSRKISKV 607 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	539	627	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-24	560	607	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.57E-19	853	946	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-22	858	940	No hit	No description
SMART	SM00666	3.1E-19	861	943	IPR000270	PB1 domain
PROSITE profile	PS51745	18.616	861	943	IPR000270	PB1 domain
Pfam	PF00564	3.7E-15	862	942	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MENGIGFWAS PRCSYIDDNV MEIMNLDTCA GIEQIFASYP TFSPINPMSI DYAPFEEQNT 60 ETFPCEGVNL MFQQNDDQFC FVESSEEADL VVETGMGKNS SKQNYVTHIV EKCVIPKSPC 120 QSLAERMLKA LELFKKSSGE GILAQVWVPM KSGDQYILST YEQPFLLDQV LSGYREVSRK 180 FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN VMYYKEAEYL RVQYAVDHEV RGSIALPILE 240 DEEYDTLCCA VLELVTVKER PNFDLETSHV CQALQAVNLR STTPTQFSSQ SLSKNQRAAL 300 AEVKDVLRAV CHAHRLPLAL TWIPRSRGGG GDEIRAHARE SIASLDEKSV LCVENTACYV 360 SDKEMQGFLH ACMGHDLEEG QGIVGKSLQS NHPFFYPDVK EYHINEYPLV HHARKFGLNA 420 AVAIRLRSIL TGDDDYVLEF FLPVDMEGST EQQLLLNNLS RTMQRICRSL RTLSDAELIG 480 EGGEKCGLQS ESVLSPPPID LSRKSSQQSL LNSTLDLSKA PIDVCDSERA GIEANISHKQ 540 TPSVSRKRTE KKRSAAEKHV SLSVLQQYFS GSLKNAAQSI GVCPTTLKRI CRQYGISRWP 600 SRKISKVNRS LVKIRTVLQS VQGIEGGLKF DTVTGGIVAA TSILQDFDSQ KSMLSPCKDV 660 SIKSSEFLFQ DAVSALQTSC IDNHDSLVKM EEDLNVDGNQ LPESSHFGPS SFRVGDKPNS 720 LLSGVCHGSK LAALDRRSSL PANPDTMPRT SSGNVSLDSF HTKGGWRSCG LNTSNLKLDN 780 SGCHFISLCP DSMAKTDDIE EKMKGSIEVD GDDGVMEHHK VSSSGVTDLS NTSRSTMNGS 840 SSSSHSSGER KHTTAEDGGS QITVKASYMK DKIRFKFEPS AGCFQLYEEV AKRFKLQIGT 900 FQLHYLDDEE EWVMLVNDAD LNECLEILDI LGTRNVKFLV QDVSGTVGSS GSSNCFLTNG 960 S*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MENGIGFWAS PRCSYIDDNV MEIMNLDTCA GIEQIFASYP TFSPINPMSI DYAPFEEQNT  60
ETFPCEGVNL MFQQNDDQFC FVESSEEADL VVETGMGKNS SKQNYVTHIV EKCVIPKSPC  120
QSLAERMLKA LELFKKSSGE GILAQVWVPM KSGDQYILST YEQPFLLDQV LSGYREVSRK  180
FTFDLEMKPG SCPGLPGRVF TSRIPEWTSN VMYYKEAEYL RVQYAVDHEV RGSIALPILE  240
DEEYDTLCCA VLELVTVKER PNFDLETSHV CQALQAVNLR STTPTQFSSQ SLSKNQRAAL  300
AEVKDVLRAV CHAHRLPLAL TWIPRSRGGG GDEIRAHARE SIASLDEKSV LCVENTACYV  360
SDKEMQGFLH ACMGHDLEEG QGIVGKSLQS NHPFFYPDVK EYHINEYPLV HHARKFGLNA  420
AVAIRLRSIL TGDDDYVLEF FLPVDMEGST EQQLLLNNLS RTMQRICRSL RTLSDAELIG  480
EGGEKCGLQS ESVLSPPPID LSRKSSQQSL LNSTLDLSKA PIDVCDSERA GIEANISHKQ  540
TPSVSRKRTE KKRSAAEKHV SLSVLQQYFS GSLKNAAQSI GVCPTTLKRI CRQYGISRWP  600
SRKISKVNRS LVKIRTVLQS VQGIEGGLKF DTVTGGIVAA TSILQDFDSQ KSMLSPCKDV  660
SIKSSEFLFQ DAVSALQTSC IDNHDSLVKM EEDLNVDGNQ LPESSHFGPS SFRVGDKPNS  720
LLSGVCHGSK LAALDRRSSL PANPDTMPRT SSGNVSLDSF HTKGGWRSCG LNTSNLKLDN  780
SGCHFISLCP DSMAKTDDIE EKMKGSIEVD GDDGVMEHHK VSSSGVTDLS NTSRSTMNGS  840
SSSSHSSGER KHTTAEDGGS QITVKASYMK DKIRFKFEPS AGCFQLYEEV AKRFKLQIGT  900
FQLHYLDDEE EWVMLVNDAD LNECLEILDI LGTRNVKFLV QDVSGTVGSS GSSNCFLTNG  960
S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244743.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A3Q7HLJ0	0.0	A0A3Q7HLJ0_SOLLC; Uncharacterized protein
STRING	Solyc08g013900.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]