PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g008500.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 215aa MW: 23750.5 Da PI: 5.2869 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 43.4 | 7.4e-14 | 40 | 71 | 33 | 63 |
zf-Dof 33 CkaC.rryWtkGGalrnvPvGggrrknkksss 63 k+C rryWt GG+lrn+P+Gg +rk+kksss Sopim08g008500.0.1 40 LKNCpRRYWTDGGSLRNIPIGGVSRKSKKSSS 71 5899799*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.6E-9 | 39 | 68 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-4 | 41 | 64 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDTSQWPQGI VVKTMEEMKI PKNTNTRKIR PQQQQNDEAL KNCPRRYWTD GGSLRNIPIG 60 GVSRKSKKSS SINIMKNNII SPKVQDIINN NNNKGVNQDL NLDFSSDFKI ISELIQVPNN 120 NSFMPIMPNI SDPNSIYLFS SNLDHGLIGS SSISDGGYEC NNIIQDLQVC TSTTTSGGIL 180 FPFEDLKQVS NTSEQSRDGE SSTNGYWDVI LGGN* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025888072.1 | 1e-154 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
TrEMBL | A0A3Q7HL54 | 1e-103 | A0A3Q7HL54_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g008500.2.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 4e-11 | Dof family protein |