PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g008480.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 320aa    MW: 36221.6 Da    PI: 9.8394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g008480.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+t Ed+ll +++k+ G g+W+  +++ g+ R++k+c++rw +yl
  Sopim08g008480.0.1 14 KGPWSTNEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61
                        79******************************99************97 PP

2Myb_DNA-binding53.46.1e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Sopim08g008480.0.1  67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111
                         89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.378961IPR017930Myb domain
SuperFamilySSF466898.59E-2811108IPR009057Homeodomain-like
SMARTSM007176.6E-101363IPR001005SANT/Myb domain
PfamPF002491.6E-121461IPR001005SANT/Myb domain
CDDcd001671.68E-71661No hitNo description
PROSITE profilePS5129425.50862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2565116IPR009057Homeodomain-like
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567111IPR001005SANT/Myb domain
CDDcd001679.40E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSTN EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY  60
LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HVIKKLKIAG  120
IQPKLHKVHK VSPKKEPKKK PKTENPRKKQ DKKKKNNKKK DQSLDTPQVV FVPKPIRISC  180
GLLRNSSVED VALLSTSSSP KMSPQTSQVL KKDTISEGSD IHLSAFLKSS SNMISPSDSY  240
EEGDNNSKKI NAITNDDENV EGKIKEVSFM PFASNLLFDE VLLDGFCDLS NESMLEKVYE  300
EYLQLISEKC YNQDAPMLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142PKKKPKT
2136154PKKKPKTENPRKKQDKKKK
3137148KKKPKTENPRKK
4137154KKKPKTENPRKKQDKKKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244728.10.0transcription factor MYB20-like
TrEMBLM1A5770.0M1A577_SOLTU; Uncharacterized protein
STRINGSolyc08g008480.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-63myb domain protein 5