PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g008480.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 320aa MW: 36221.6 Da PI: 9.8394 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.2 | 2.1e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl Sopim08g008480.0.1 14 KGPWSTNEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++ Sopim08g008480.0.1 67 RGNFSQDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.378 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.59E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.508 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.40E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MGRAPCCAKE GLRKGPWSTN EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SQDEEDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HVIKKLKIAG 120 IQPKLHKVHK VSPKKEPKKK PKTENPRKKQ DKKKKNNKKK DQSLDTPQVV FVPKPIRISC 180 GLLRNSSVED VALLSTSSSP KMSPQTSQVL KKDTISEGSD IHLSAFLKSS SNMISPSDSY 240 EEGDNNSKKI NAITNDDENV EGKIKEVSFM PFASNLLFDE VLLDGFCDLS NESMLEKVYE 300 EYLQLISEKC YNQDAPMLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 142 | PKKKPKT |
2 | 136 | 154 | PKKKPKTENPRKKQDKKKK |
3 | 137 | 148 | KKKPKTENPRKK |
4 | 137 | 154 | KKKPKTENPRKKQDKKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244728.1 | 0.0 | transcription factor MYB20-like | ||||
TrEMBL | M1A577 | 0.0 | M1A577_SOLTU; Uncharacterized protein | ||||
STRING | Solyc08g008480.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-63 | myb domain protein 5 |