PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim08g007830.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 26038.8 Da PI: 4.7213 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 36 | 87 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +++Wv+e+r+pse +kr++lg++ t+e+Aa+a++ a+++l+g+ Sopim08g007830.0.1 36 PVYRGVRRRD-NNKWVCEVREPSE---QKRIWLGTYPTPEMAARAHDVAALALRGN 87 68*****998.8*********976...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-14 | 36 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-29 | 37 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-26 | 37 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.746 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-21 | 37 | 96 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-7 | 38 | 49 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-27 | 38 | 96 | No hit | No description |
PRINTS | PR00367 | 3.5E-7 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MNSDHFRVQD EGVFLLASSQ PKKRAGRKKF KETRHPVYRG VRRRDNNKWV CEVREPSEQK 60 RIWLGTYPTP EMAARAHDVA ALALRGNLAT LNFADSSWRL TVPISKDPEE LRKAAMQAAE 120 ELVGVGYMNE EINYIEENIA IGGANGSDNS NLVGNEVNNN NNIQNMEMGN ISCYNNWGDN 180 NEMLEIEGST WQEKMSEGHL FSPTPHYDSC FSWDDVESDG EVSLWSYNM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00001 | PBM | Transfer from 471409 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244599.1 | 1e-171 | dehydration-responsive element-binding protein 1F-like | ||||
TrEMBL | A0A3Q7HI47 | 1e-170 | A0A3Q7HI47_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007830.1.1 | 1e-171 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-42 | ERF family protein |