PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim08g007820.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 27407.7 Da PI: 4.646 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr++ +++Wv+e+r+ps+ +kr++lg++ t+e+Aa+a++ a+++l+g+ Sopim08g007820.0.1 49 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100 68*****887.8*********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-13 | 49 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-27 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 50 | 109 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 50 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-21 | 50 | 109 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.61E-29 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 2.5E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MNNDSSLYSS DINPLSATTP SNEEGILLLA SSQPKKRAGR KKFKETRHPV YRGVRRRNNN 60 KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WGLPVPASKD 120 PKDIRQAAVM AAQAFSQDTE LVGVDYMNEE VNSNTIDEIK YQEIDIARAN DGSSSDFGAK 180 ELCIDMENIL CCNWGEDNDM LEMEGWQEKM AKGLLFSPTP RLGSCFSWDD VESDVEVSLW 240 SYSI* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975520 | 0.0 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324621.1 | 0.0 | dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A3Q7HI06 | 0.0 | A0A3Q7HI06_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007820.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-43 | C-repeat-binding factor 4 |