PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g007190.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 543aa    MW: 60303.5 Da    PI: 7.4971
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g007190.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sopim08g007190.0.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                        ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-11446No hitNo description
CDDcd002022.76E-16655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003209.9E-14741IPR000679Zinc finger, GATA-type
PfamPF139192.8E-9282363IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH  60
RVSRFKNISM KNKEAKILKR KQSHHDAEVG TPDYSLGFRK VLDEDTSNRS SSGSAISNSE  120
SCAQFGSAEA SDLTGPAQSN IWDSTVPSRK RTCFNRPKPS SVEKLTKDLY TILHEQQSSY  180
LSASSEEELL FESDKPMVSV EIGHGSVLMR HPSTIGREEE SEASSLSVDN KHRSVSDAYS  240
RLTTPPVNIS KGVNSPNMGT ERIKKPTGPA IEQDQIKRNK DHLEKLQILG HHNSPLRYLD  300
LKDVLNYEEF TTHLSSDEQQ QLLKYLPPVD SFAPPDSLRS VFESSQFEEN LCSFQKLLAE  360
GVFDNSFPGV TLEDCRNLKR FILCYLTKSK WVQQYNLLKD TKCKNSSSGS EVAGEPNAVG  420
TCHSANVKKP REGQYPKCSG AKTTMKSPKR VVMKSIYEQK ELVDNDGSCF SPRSSFALPS  480
ENSSLVLDSL RSANENSHQD LLLDVPSNSY CPQAELLLPT SSFTTQASTS SSSMYPPHFI  540
RP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244556.10.0GATA transcription factor 26-like
SwissprotQ8W4H11e-146GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A3Q7HK810.0A0A3Q7HK81_SOLLC; Uncharacterized protein
STRINGSolyc08g007190.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-138GATA transcription factor 26