PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g005870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 284aa    MW: 32799.7 Da    PI: 7.9964
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g005870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed+ll +++k++G g  W++ +++ g+ R++k+c++rw +yl
  Sopim08g005870.0.1 14 KGSWTKKEDLLLTEYIKEYGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62
                        799*******************99*********99************97 PP
2Myb_DNA-binding53.94e-1768111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+eEd+l+v++ ++lG++ W++Ia +++ gRt++++k++w++
  Sopim08g005870.0.1  68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIP-GRTDNDIKNYWNT 111
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20565IPR009057Homeodomain-like
PROSITE profilePS5129413.096962IPR017930Myb domain
SuperFamilySSF466895.14E-2711109IPR009057Homeodomain-like
SMARTSM007178.3E-111364IPR001005SANT/Myb domain
PfamPF002495.1E-131462IPR001005SANT/Myb domain
CDDcd001676.04E-71662No hitNo description
PROSITE profilePS5129422.90263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2366118IPR009057Homeodomain-like
SMARTSM007179.8E-1467115IPR001005SANT/Myb domain
PfamPF002497.7E-1568111IPR001005SANT/Myb domain
CDDcd001673.58E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK EYGEGTGWRS LPKKAGLLRC GKSCRLRWVN  60
YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRIPGR TDNDIKNYWN TSLLKKLKAQ  120
GNEPREHKSQ AKKRRRKEEK ANVSSQINRK NNNENKKKMK KEKIVEKHNI EDEEATKIEE  180
QPHAQDFAQP VSDSNHNFTS SCSNQDGTSS STSSSEIHSS SQNTEYHNQD EIFEKLQVID  240
ELLLNDNCLF QPEKCIEFNN NENHMLFEEV YEEYFQLVSE NSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-25141412123MYB3
3zqc_D1e-25141412123MYB3
3zqc_G1e-25141412123MYB3
3zqc_J1e-25141412123MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KKRRRK
2134159RRKEEKANVSSQINRKNNNENKKKMK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244688.10.0myb-related protein 308-like
SwissprotP813931e-58MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3Q7HGY80.0A0A3Q7HGY8_SOLLC; Uncharacterized protein
STRINGSolyc08g005870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-59myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]