PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim07g066330.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38826.6 Da PI: 7.8311 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.9e-51 | 14 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhP+deel+++yL kkv++++ + + evd++k+ePw++p+ + + kewyf+s+rd+kyatg r+nrat sgyWkatgkd Sopim07g066330.0.1 14 LPPGFRFHPRDEELICDYLMKKVDQQSeyQQQYPLLIEVDLNKSEPWEIPEVACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATGKD 104 79***********************996433334599*************7666789********************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++++ kg+lvg++ktLvfy+grapkg+k+dWvmhe+rle Sopim07g066330.0.1 105 RAIIR-KGSLVGMRKTLVFYQGRAPKGRKSDWVMHEFRLE 143 ****9.999****************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 4 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MSNNNSLSMV ESKLPPGFRF HPRDEELICD YLMKKVDQQS EYQQQYPLLI EVDLNKSEPW 60 EIPEVACVGG KEWYFYSQRD RKYATGLRTN RATVSGYWKA TGKDRAIIRK GSLVGMRKTL 120 VFYQGRAPKG RKSDWVMHEF RLELPIRPQI SSIKEDWVLC RVFHKKKELL ATKQEIGSNN 180 IYYDNDTISC SSLPPLMDPY ITFDQTNPNN NNMNMNELYY EQVPCFSIFT PNQTFTSHSH 240 HLPSATTAIG STAYGGFPAD IGNYLNATAT SSTCDNNKVI RAVLSHLSTK NNIIMEGNNS 300 NNNNIINPAQ NIKGGNSPSF GEGSSETSFL SEVGYPTMWN NY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 1 | 166 | 4 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 1 | 166 | 4 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC187539 | 0.0 | AC187539.1 Solanum lycopersicum cv. Heinz 1706, chromosome 7 BAC clone C07HBa0179K09, complete sequence. | |||
GenBank | AC210361 | 0.0 | AC210361.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0215P04, complete sequence. | |||
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243993.1 | 0.0 | NAC domain-containing protein 21/22 isoform X1 | ||||
Swissprot | Q84TE6 | 1e-108 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3Q7ID26 | 0.0 | A0A3Q7ID26_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g066330.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-109 | NAC domain containing protein 1 |