|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopim07g066250.0.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
GRAS |
Protein Properties |
Length: 429aa MW: 48519.9 Da PI: 7.605 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopim07g066250.0.1 | genome | CSHL | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 437.5 | 1e-133 | 50 | 428 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl....fs 85
++lL++cAe +s++d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r +s++ + ++p et++++ ss++la + ++
Sopim07g066250.0.1 50 RQLLISCAELISQSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTNHFMTPVETTPTDssSSSSLALIQSsylsLN 140
89****************************************************55555666668888887775533333333335668** PP
GRAS 86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
+v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R ++p+lRiTg g+ + ++l++tg+rLakfA++lg++
Sopim07g066250.0.1 141 QVTPFIRFTQLTANQAILEAINGNhQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLR 226
***********************9899***********************9.899**********....********************** PP
GRAS 176 fefnvl.vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
f+f++l +a++ +d ++++ + p+E+la+n+v+ lhrll+++ +l+ +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+ea
Sopim07g066250.0.1 227 FQFHPLyIANNNHDHdedpsIISSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEA 313
******73333333322222356667778****************99999999....********************************** PP
GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
l+yy+a+fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy+
Sopim07g066250.0.1 314 LDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQ 404
******************************************************************************************* PP
GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
+ +s+s++lgW+++pL+s+S+Wr
Sopim07g066250.0.1 405 LGVSSNSFFLGWQNQPLFSISSWR 428
***********************8 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 429 aa
Download sequence Send
to blast |
MLGSFGSSSS QSHPHHDEES SDHHQQRRFT ATATTITTTT ITTSPAIQIR QLLISCAELI 60 SQSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP 120 TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ 180 WPPLMQALAD RYPAPTLRIT GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYIANNNHD 240 HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN 300 HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE 360 RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS EGYQLGVSSN SFFLGWQNQP 420 LFSISSWR*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC187539 | 0.0 | AC187539.1 Solanum lycopersicum cv. Heinz 1706, chromosome 7 BAC clone C07HBa0179K09, complete sequence. |
GenBank | AF098674 | 0.0 | AF098674.1 Lycopersicon esculentum lateral suppressor protein (Ls) mRNA, complete cds. |
GenBank | AJ303345 | 0.0 | AJ303345.1 Lycopersicon esculentum lateral suppressor gene, ORF1 and ORF2. |
GenBank | HG975519 | 0.0 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |