PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g066250.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 429aa    MW: 48519.9 Da    PI: 7.605
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g066250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.51e-133504282374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl....fs 85 
                         ++lL++cAe +s++d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  +s++ + ++p et++++  ss++la  +     ++
  Sopim07g066250.0.1  50 RQLLISCAELISQSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTNHFMTPVETTPTDssSSSSLALIQSsylsLN 140
                         89****************************************************55555666668888887775533333333335668** PP

                GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                         +v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakfA++lg++
  Sopim07g066250.0.1 141 QVTPFIRFTQLTANQAILEAINGNhQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLR 226
                         ***********************9899***********************9.899**********....********************** PP

                GRAS 176 fefnvl.vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                         f+f++l +a++ +d       ++++ + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+ea
  Sopim07g066250.0.1 227 FQFHPLyIANNNHDHdedpsIISSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEA 313
                         ******73333333322222356667778****************99999999....********************************** PP

                GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                         l+yy+a+fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy+
  Sopim07g066250.0.1 314 LDYYTAVFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQ 404
                         ******************************************************************************************* PP

                GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                         +  +s+s++lgW+++pL+s+S+Wr
  Sopim07g066250.0.1 405 LGVSSNSFFLGWQNQPLFSISSWR 428
                         ***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.36523407IPR005202Transcription factor GRAS
PfamPF035143.4E-13150428IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLGSFGSSSS QSHPHHDEES SDHHQQRRFT ATATTITTTT ITTSPAIQIR QLLISCAELI  60
SQSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP  120
TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ  180
WPPLMQALAD RYPAPTLRIT GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYIANNNHD  240
HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN  300
HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE  360
RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS EGYQLGVSSN SFFLGWQNQP  420
LFSISSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-615642725377Protein SCARECROW
5b3h_D1e-615642725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1875390.0AC187539.1 Solanum lycopersicum cv. Heinz 1706, chromosome 7 BAC clone C07HBa0179K09, complete sequence.
GenBankAF0986740.0AF098674.1 Lycopersicon esculentum lateral suppressor protein (Ls) mRNA, complete cds.
GenBankAJ3033450.0AJ303345.1 Lycopersicon esculentum lateral suppressor gene, ORF1 and ORF2.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234179.10.0lateral suppressor protein
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLQ9ZSP20.0Q9ZSP2_SOLLC; Lateral suppressor
STRINGSolyc07g066250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-128GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]