PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g064890.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 241aa    MW: 26357.2 Da    PI: 7.9441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g064890.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.8e-203987355
                 AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++aa++ l+g
  Sopim07g064890.0.1 39 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARTLRG 87
                        8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-3738101IPR001471AP2/ERF domain
PfamPF008471.2E-123887IPR001471AP2/ERF domain
PROSITE profilePS5103223.2353895IPR001471AP2/ERF domain
CDDcd000182.01E-183895No hitNo description
PRINTSPR003673.1E-103950IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-223996IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-313995IPR001471AP2/ERF domain
PRINTSPR003673.1E-106177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRRSRAAAAA RQVPATEVPV PAPVAGEHNG SGGSKEIRFR GVRKRPWGRF AAEIRDPWKK  60
TRVWLGTFDS AEDAARAYDA AARTLRGPKA KTNFPLPSSH HLPPYPHHHQ FNQSINPNDP  120
FVDSRLYSQD HPLVSQRPTS SSMSSTVESF SGPRQPPRQQ TAASVPSRKY PRSPPVVPDD  180
CHSDCDSSSS VVEDGECDND NIASSSFRKP LPFDLNLPAP MDDFSADAYA DDLHCTALCL  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-203996664ATERF1
3gcc_A3e-203996664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6756910.0AB675691.1 Solanum lycopersicum SlERF7 mRNA for ethylene responsive factor, complete cds.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239044.11e-176ethylene response factor F.2
SwissprotQ9SXS82e-86ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLG5EM371e-175G5EM37_SOLLC; Ethylene responsive factor
STRINGSolyc07g064890.1.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-28ethylene responsive element binding factor 3