PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim07g064000.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 221aa MW: 25221.2 Da PI: 3.9987

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g064000.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.8	2e-10	129	215	12	98
DUF573 12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++++L+++ d++ sp+ ++ +vk+s ++k+s++ l eKi L k f++ +++ g++p+++++ d++if+ls++iWg+ Sopim07g064000.0.1 129 DLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 215 489******988777666558999999999998469*******************9..*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLPAIGRTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEED MENLGSGNNV 60 NHQNSEENGS GNQESYDENH TSWLVVVEDD EDEEEERRRA AEKGKQPMSD GGGISITELH 120 DEDEDHHLDL AILKAMCDYE CIIRNSPQLS SFNNRLVYVK DSFPDLKMSR EALEEKIIAL 180 CKNFNDVREQ LGDDPRMDRP IDREIFNLSM IIWGTKVIPR *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210356	0.0	AC210356.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 7 clone C07HBa0130B18, complete sequence.
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7HF32	1e-159	A0A3Q7HF32_SOLLC; Uncharacterized protein
STRING	Solyc07g064000.1.1	1e-160	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17221	5	5