PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g063940.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 584aa    MW: 64966.4 Da    PI: 6.2823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g063940.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.97.2e-1272135821373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+elL++cA+a+++++l   ++l+a+ +  +s +gdp+qRl ay++e+L ar   s++++y+al+++e +     + l+++++++e++P+l
  Sopim07g063940.0.1 213 LKELLIACARALAENNLDDFEKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GWDLLSYMHILYEICPYL 300
                         5799*****************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI +a  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  + + l  +g++La + e++++p+ef++
  Sopim07g063940.0.1 301 KFGYMAANGAIADACRNENRIHIIDFQIAQGTQWLTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLAVVGKKLAAISEKFNIPVEFHA 391
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     +++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rf eal+yysa+f+s+
  Sopim07g063940.0.1 392 -VPVFAPEVTRDMLDVRPGEALAVNFPLTLHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFQEALDYYSAMFESI 481
                         .6888999*********************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++l r+ +eri+vE+++l+r+ivnv+aceg er+erhe l+kW+ r+++aGF+++pls+++++ +k+l+r ++ + y++ e++g+++lgW
  Sopim07g063940.0.1 482 DVTLERDRKERINVEQHCLARDIVNVIACEGMERVERHELLGKWKLRFTMAGFHQYPLSSYVNSVIKSLMRCYS-EHYTLVEKDGAMLLGW 571
                         *********************************************************************99888.66************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r+L+s+SaW
  Sopim07g063940.0.1 572 KKRNLISASAW 582
                         *********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.966187564IPR005202Transcription factor GRAS
PfamPF035142.5E-124213582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MESHNLYGYG ATDVNLPYSY SMTTTPSIPN RLLGILKFDS GNSPNSPFAN YNDPGTPTTL  60
SDSLEQHSST ENISGTSPCS NSSRDYNHYF CRPSPSPDIH HNNLLVYSGD NSLLQYANHS  120
HNMKHALLQL ETALMGPEEV TTSSPSAGEI QQPQASGGQR SGMWHQDGQV PYRIETQPSH  180
VSVFGISGDI IQSEEHHKPM VDYPSQGIPF GNLKELLIAC ARALAENNLD DFEKLIAKAR  240
SAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGWDLLSYM HILYEICPYL  300
KFGYMAANGA IADACRNENR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPY VRITGIDDPV  360
SKYARGDGLA VVGKKLAAIS EKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLTL  420
HHTPDESVDV TNPRDELLRM VKSFSPKVVT LVEQESNTNT APFFPRFQEA LDYYSAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGMERVERHE LLGKWKLRFT MAGFHQYPLS  540
SYVNSVIKSL MRCYSEHYTL VEKDGAMLLG WKKRNLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-622175838375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001293105.10.0GRAS2 protein
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLQ00LP60.0Q00LP6_SOLLC; GRAS2
STRINGSolyc07g063940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-168GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]