PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g063840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 157aa    MW: 18606.6 Da    PI: 4.992
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g063840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57341.53.6e-13701541297
              DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                          +++L+ + d+k+ktg  p+    ++ +f+  si ++++s++ lv+Ki  +K+ +++ ++   +g++p ++++ d++if+ls+++Wg
  Sopim07g063840.0.1  70 SLAILRSMWDYKSKTGDFPYPPSIELLNFIMYSIpNLTISREKLVKKITTFKNNYNDAWEL--DGDHPGLDRPVDREIFNLSMRLWG 154
                         589******************99999999999984589***********************..***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-970154IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLHENDRKRL RSDEKEESDE TGEGKTEELD PNEDEKERRR RRAVKKGKQS MSGRQSDADY  60
YDYDYDYNQS LAILRSMWDY KSKTGDFPYP PSIELLNFIM YSIPNLTISR EKLVKKITTF  120
KNNYNDAWEL DGDHPGLDRP VDREIFNLSM RLWGDH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630430.11e-25PREDICTED: ABC transporter F family member 4-like
TrEMBLA0A3Q7HF051e-110A0A3Q7HF05_SOLLC; Uncharacterized protein
STRINGSolyc07g063840.1.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.12e-08DNA-binding storekeeper protein-related transcriptional regulator